A D E F G H I J M P R S U

A

addMol(String) - Method in class JMView

Starts loading molecules in a separate thread.

addMol(String, String) - Method in class JMView

Starts loading molecules in a separate thread.

animate(String) - Method in class JMView

Starts or stops animation.

D

destroy() - Method in class JMSketch

Disposes all the frames and removes references to the sketcher.

destroy() - Method in class JMView

Dispose all the frames.

E

evaluateChemicalTerms(String) - Method in class JMSketch

Evaluates a Chemical Terms expression on the molecule in MarvinSketch, and returns the result in string format.

evaluateChemicalTerms(String, int) - Method in class JMView

Evaluates a Chemical Terms expression on the molecule in given cell, and returns the result in string format.

F

focusGained(FocusEvent) - Method in class JMView

focusLost(FocusEvent) - Method in class JMView

G

getAppletInfo() - Method in class JMSketch

Returns a string containing the version and the author.

getAppletInfo() - Method in class JMView

Returns a string containing the version and the author.

getAtomAlias(int) - Method in class JMSketch

Gets atom alias.

getAtomAlias(int, int) - Method in class JMView

Gets atom alias.

getAtomCount() - Method in class JMSketch

Returns the number of atoms.

getAtomCount(int) - Method in class JMView

Gets the number of atoms in the specified molecule cell.

getAtomExtraLabel(int) - Method in class JMSketch

Gets extra atom label.

getAtomExtraLabel(int, int) - Method in class JMView

Gets extra atom label.

getAutoScale() - Method in class JMSketch

Returns the autoscale property.

getBestTabScale(int) - Method in class JMView

Gets the best scale value for a molecule cell.

getBestTabScale() - Method in class JMView

Gets the smallest best scale value in the molecule table.

getC(int) - Method in class JMView

Gets the state of a checkbox.

getCellCount() - Method in class JMView

Gets the number of cells in the table.

getImageShowURL() - Method in class JMSketch

getL(int) - Method in class JMView

Gets a label.

getM(int, String) - Method in class JMView

Gets the nth molecule in a text format.

getMol(String) - Method in class JMSketch

Gets the molecule in a text format.

getMolExactMass() - Method in class JMSketch

Gets the exact molecule weight.

getMolExactMass(int) - Method in class JMView

Gets the exact molecule weight.

getMolFormula() - Method in class JMSketch

Gets the molecule formula.

getMolFormula(int) - Method in class JMView

Gets the molecule formula.

getMolMass() - Method in class JMSketch

Gets the molecule weight.

getMolMass(int) - Method in class JMView

Gets the molecule weight.

getMolProperty(String) - Method in class JMSketch

Gets an RDfile/SDfile property.

getMolPropertyCount() - Method in class JMSketch

Gets the number of RDfile/SDfile properties.

getMolPropertyKey(int) - Method in class JMSketch

Gets an RDfile/SDfile property key.

getMProperty(int, String) - Method in class JMView

Gets an RDfile/SDfile property.

getMPropertyCount(int) - Method in class JMView

Gets the number of RDfile/SDfile properties.

getMPropertyKey(int, int) - Method in class JMView

Gets an RDfile/SDfile property key.

getPiece(String) - Method in class JMSketch

Gets the current molecule piece in the specified format.

getScale() - Method in class JMSketch

Gets the magnification.

getSelectedIndex() - Method in class JMView

Gets the index of the molecule that is selected by the user.

getSelectedMol(String) - Method in class JMSketch

Gets the selected molecule part in a text format.

getT(int) - Method in class JMView

Gets the value of a text field.

getTabScale(int) - Method in class JMView

Gets the magnification for a molecule cell.

H

hasValenceError() - Method in class JMSketch

Determines if this molecule has a valence error on any of its atoms.

hasValenceError(int) - Method in class JMView

Determines if the molecule in the specified cell has a valence error on any of its atoms.

I

init() - Method in class JMSketch

Initializes the applet.

init() - Method in class JMView

Initializes the applet.

isAtomSelected(int) - Method in class JMSketch

Returns true if atom is selected.

isAtomSetVisible(int) - Method in class JMView

Is the specified atom set visible?

isChemicalTermsExpressionSyntaxError() - Method in class JMSketch

Returns true, if the last Chemical Terms expression evaluated by the JMSketch.evaluateChemicalTerms(String) method is a syntactically not correct expression.

isChemicalTermsExpressionSyntaxError() - Method in class JMView

Returns true, if the last Chemical Terms expression evaluated by the evaluateChemicalTerms(String, int) method is a syntactically not correct expression.

isEmpty() - Method in class JMSketch

Returns true sketcher canvas is empty.

isEmpty(int) - Method in class JMView

Returns true if molecule cell is empty.

isSelected(int, int) - Method in class JMView

Is the specified atom selected?

isSetVisible(int) - Method in class JMView

Deprecated. as of Marvin 3.3, replaced by isAtomSetVisible

J

JMSketch - Class in <Unnamed>

Swing version of the MarvinSketch Applet.

JMSketch() - Constructor for class JMSketch

JMView - Class in <Unnamed>

Swing version of the MarvinView Applet.

JMView() - Constructor for class JMView

M

mouseClicked(MouseEvent) - Method in class JMSketch

Does nothing.

mouseClicked(MouseEvent) - Method in class JMView

mouseEntered(MouseEvent) - Method in class JMSketch

Does nothing.

mouseEntered(MouseEvent) - Method in class JMView

mouseExited(MouseEvent) - Method in class JMSketch

Does nothing.

mouseExited(MouseEvent) - Method in class JMView

mousePressed(MouseEvent) - Method in class JMSketch

Does nothing.

mousePressed(MouseEvent) - Method in class JMView

mouseReleased(MouseEvent) - Method in class JMSketch

Handles the viewer button press events.

mouseReleased(MouseEvent) - Method in class JMView

P

postImage(String, String) - Method in class JMSketch

Posts image to CGI script.

propertyChange(PropertyChangeEvent) - Method in class JMSketch

Invoke propertyChange(prop) JavaScript method on applet's page.

propertyChange(PropertyChangeEvent) - Method in class JMView

Invoke propertyChange(prop) JavaScript method on applet's page.

R

redo() - Method in class JMSketch

Invokes the Redo command.

S

selectAllAtoms(boolean) - Method in class JMSketch

Select or unselect all atoms in the specified molecule.

selectAllAtoms(int, boolean) - Method in class JMView

Select or unselect all atoms in the specified molecule.

selectAtom(int, boolean) - Method in class JMSketch

Select or unselect an atom in the specified molecule.

selectAtom(int, int, boolean) - Method in class JMView

Select or unselect an atom in the specified molecule.

setActionB(int, String) - Method in class JMView

Sets the action string (URL or JavaScript expression) of a button.

setActionC(int, boolean, String) - Method in class JMView

Sets one of the two action strings (JavaScript expressions) of a checkbox.

setAtomAlias(int, String) - Method in class JMSketch

Sets atom alias.

setAtomAlias(int, int, String) - Method in class JMView

Sets atom alias.

setAtomExtraLabel(int, String) - Method in class JMSketch

Sets extra atom label.

setAtomExtraLabel(int, int, String) - Method in class JMView

Sets extra atom label.

setAtomSetColor(int, int) - Method in class JMView

Sets the color of an atom set.

setAtomSetSeq(int, int, int) - Method in class JMView

Sets the set sequence number of the atom.

setAtomSetVisible(int, boolean) - Method in class JMView

Set the visibility of the specified atom set.

setAutoScale(boolean) - Method in class JMSketch

Sets the autoscale property.

setBondSetColor(int, int) - Method in class JMView

Sets the color of a bond set.

setBondSetSeq(int, int, int, int) - Method in class JMView

Sets the set sequence number of a bond.

setBondSetSeqAll(int, int) - Method in class JMView

Sets the set sequence number for each bond.

setC(int, boolean) - Method in class JMView

Sets the state of a checkbox.

setL(int, String) - Method in class JMView

Sets a label.

setM(int, String) - Method in class JMView

Starts loading a molecule into the nth cell in a separate thread.

setM(int, String, String) - Method in class JMView

Starts loading a molecule into the nth cell in a separate thread.

setMol(String) - Method in class JMSketch

Starts loading a molecule into the sketcher in a separate thread.

setMol(String, String) - Method in class JMSketch

Starts loading a molecule into the sketcher in a separate thread.

setMol(String) - Method in class JMView

Starts loading molecules in a separate thread.

setMol(String, String) - Method in class JMView

Starts loading molecules in a separate thread.

setMolProperty(String, String) - Method in class JMSketch

Sets an RDfile/SDfile property.

setMProperty(int, String, String) - Method in class JMView

Sets an RDfile/SDfile property.

setParentApplet(JApplet) - Method in class JMSketch

Sets the parent applet object in which the JMSketch applet is embedded.

setParentApplet(JApplet) - Method in class JMView

Sets the parent applet object in which the JMView applet is embedded.

setPiece(String) - Method in class JMSketch

Sets the current piece.

setScale(double) - Method in class JMSketch

Sets the magnification.

setSelectedIndex(int) - Method in class JMView

Selects a molecule.

setSetColor(int, int) - Method in class JMView

Deprecated. as of Marvin 3.3, replaced by setAtomSetColor

setSetSeq(int, int, int) - Method in class JMView

Deprecated. as of Marvin 3.3, replaced by setAtomSetSeq

setSetVisible(int, boolean) - Method in class JMView

Deprecated. as of Marvin 3.3, replaced by setAtomSetVisible

setT(int, String) - Method in class JMView

Gets the value of a text field.

start() - Method in class JMSketch

Starts the applet.

start() - Method in class JMView

Starts the applet.

stop() - Method in class JMSketch

Hide the frames when stopped.

stop() - Method in class JMView

Stops the applet.

U

undo() - Method in class JMSketch

Invokes the Undo command.

A D E F G H I J M P R S U