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Help mscoring

 

One and three code letter for natural and phosphorylated amino acids.                           (Please read this help!)

4GBQ2

Normalized sum of energies

 

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL optimum
1
0.0
 0.04 0.06 0.07 0.05 0.176 0.05 0.03 0.04 0.02 0.09 0.02 0.04 0.18 0.1
0.0
 0.01 0.151 0.12 0.03
A
STIKGVRHMCENDLPYWQF
2 0.251 1.057 0.733 1.486 0.602 1.094 0.86 1.117 1.539 2.301 1.395 0.037 0.671 0.802
0.0
 1.211 2.257 0.636 0.49 1.544
P
KAY
3 1.069 1.086 1.891 0.502 1.914 0.864 0.74 2.606 2.715 2.07 0.549 0.753 1.338 1.116
0.0
 1.768 2.222 0.697 1.372 1.312
P
4 0.103 0.09 0.161 0.168 0.128 0.109
0.0
 0.068 0.334 0.101 0.133 0.043 0.159 0.141 0.041 0.113 0.091 0.046 0.163 0.081
E
PKWGVRTIAQSCLFMNYDH
5 1.847
0.0
 2.594 2.673 1.407 2.255 2.498 2.476 1.953 0.82 1.922 1.17 1.095 2.05 1.797 2.432 1.636 2.344 2.434 0.711
R
6 0.321 2.392 1.017 3.302 2.283 2.827 2.579 1.098 1.499 4.001 3.714 2.532 1.832 2.616
0.0
 2.884 3.822 3.308 2.142 3.348
P
A
7 0.38
0.0
 0.42 0.56 0.39 0.29 0.52 0.35 0.146 0.3 0.29 0.15 0.27 0.34 0.424 0.37 0.33 0.4 0.42 0.35
R
HKMQLITFGVSACWNYP
8 2.223 0.64
0.0
 3.433 1.489 1.054 2.796 2.201 2.111 1.022 0.809 1.028 0.316 2.895 2.153 2.199 1.743 2.908 2.679 1.881
N
M
9 1.513
0.0
 1.392 1.892 1.312 1.399 1.925 1.17 1.097 1.617 1.752 0.616 1.312 1.7 5.355 1.332 1.581 2.217 1.193 1.538
R
10 1.308
0.0
 1.082 1.588 1.384 1.464 1.852 1.664 0.798 1.543 1.523 0.886 1.434 1.016 2.393 1.499 1.707 1.685 0.864 1.496
R


Binding energies

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL optimum
1 -6.780 -6.740 -6.720 -6.710 -6.730 -6.620 -6.730 -6.750 -6.740 -6.760 -6.690 -6.760 -6.740 -6.600 -6.680 -6.780 -6.770 -6.630 -6.660 -6.750
A
STIKGVRHMCENDLPYWQF
2 -6.720 -6.700 -6.440 -5.820 -6.340 -6.500 -6.180 -5.810 -5.490 -5.440 -6.490 -7.590 -6.590 -6.310 -6.940 -5.720 -4.860 -6.320 -7.120 -5.510
K
Y
3 -6.720 -6.780 -5.990 -7.340 -5.800 -6.930 -7.070 -4.920 -5.030 -6.270 -7.340 -6.960 -6.470 -6.450 -7.590 -5.950 -5.560 -7.040 -6.320 -6.480
P
DL
4 -6.780 -6.920 -6.790 -6.860 -6.760 -6.780 -6.900 -6.780 -6.550 -6.760 -6.750 -6.840 -6.750 -6.720 -6.820 -6.770 -6.770 -6.840 -6.720 -6.780
R
EDKWPNAQGVSTCILMFYH
5 -6.750 -9.560 -6.550 -6.480 -7.190 -6.910 -6.680 -6.050 -7.210 -8.360 -7.270 -8.110 -8.050 -7.150 -6.800 -6.200 -7.000 -6.860 -6.710 -7.910
R
6 -6.830 -5.650 -6.780 -5.170 -5.120 -5.090 -5.380 -6.010 -7.260 -4.370 -5.130 -6.270 -5.990 -6.090 -7.220 -4.620 -3.710 -5.440 -6.640 -5.240
H
PAN
7 -6.780 -7.160 -6.740 -6.600 -6.770 -6.870 -6.640 -6.810 -7.020 -6.860 -6.870 -7.010 -6.890 -6.820 -6.740 -6.790 -6.830 -6.760 -6.740 -6.810
R
HKMQLITFGVSACWNPY
8 -6.810 -9.700 -9.160 -5.580 -7.560 -8.230 -6.310 -6.430 -7.370 -8.180 -8.450 -8.470 -8.710 -7.150 -6.860 -6.830 -7.360 -7.130 -7.410 -7.540
R
9 -6.720 -8.690 -6.680 -6.180 -6.760 -6.830 -6.280 -6.690 -7.490 -6.820 -6.850 -8.020 -6.760 -6.930 -6.970 -6.740 -6.700 -6.880 -8.030 -6.740
R
10 -6.780 -8.450 -7.060 -6.500 -6.870 -6.790 -6.400 -6.410 -7.500 -6.780 -7.010 -7.410 -6.820 -7.280 -6.940 -6.640 -6.810 -6.750 -7.480 -6.820
R


Stability energies

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL optimum
1 45.160 44.600 45.200 45.220 45.190 44.670 45.190 45.160 44.370 45.220 45.150 45.160 45.180 45.120 45.230 45.160 45.190 44.830 45.130 45.190
H
RQW
2 45.160 46.400 45.940 46.280 45.730 46.520 45.870 46.250 47.090 47.860 46.500 45.660 45.890 46.020 44.260 45.990 47.770 46.320 45.790 47.000
P
3 44.900 44.920 46.410 44.450 46.260 45.120 44.750 46.520 46.960 46.470 44.780 45.020 45.410 45.350 42.980 45.660 46.980 45.250 45.620 46.030
P
4 45.160 44.350 44.910 44.870 45.390 44.670 45.070 45.670 44.610 45.110 45.140 44.970 45.340 45.100 44.390 45.220 45.040 44.940 45.130 45.040
R
PHQ
5 46.560 43.120 46.580 46.800 46.520 45.490 46.790 47.710 44.550 45.410 44.980 44.450 45.670 45.090 45.780 46.850 46.810 46.860 46.820 45.970
R
6 46.320 48.660 47.420 49.740 48.240 49.130 48.500 47.320 47.530 50.660 49.350 48.370 47.970 48.470 45.030 48.790 50.200 49.270 48.140 49.900
P
7 45.160 44.650 45.380 45.340 45.410 44.920 45.640 45.380 44.540 45.370 45.190 44.890 45.320 45.260 44.470 45.170 45.140 45.310 45.080 45.250
P
HRKQ
8 45.840 42.560 43.050 47.040 45.550 44.560 45.730 46.610 45.480 44.960 44.480 44.560 44.280 44.880 44.970 45.080 44.800 44.890 44.690 45.940
R
N
9 44.930 41.970 43.160 44.760 44.140 44.250 45.060 43.010 43.200 46.560 44.330 43.020 44.320 43.870 48.410 44.250 45.860 44.730 43.460 46.420
R
10 45.180 43.650 45.060 45.690 45.000 45.070 45.520 45.040 44.290 45.650 45.070 44.480 45.100 44.550 47.340 45.040 45.060 45.340 44.330 45.620
R

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