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Help mscoring

 

One and three code letter for natural and phosphorylated amino acids.                           (Please read this help!)

1YGR2

Normalized sum of energies

 

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL PTR SEP TPO optimum
1 1.024 0.974 0.914 1.477 2.272 0.663 0.505 0.896 0.901 0.949 0.621 0.562 0.544 0.601 0.652 1.845 0.89 0.43 0.406 0.987
0.0
0.781 1.143
y
YW
2 2.261 1.715 1.259 1.214 1.704 1.483 0.982 1.489 1.996 2.464 0.916 3.157 0.744 1.081 3.335 1.848 1.674
0.0
1.535 2.688 1.764 2.201 4.962
W
3 2.078 0.222 1.75 1.974 1.43 1.784 1.725 2.279 1.355 0.142 0.795 0.721 0.704
0.0
1.984 2.083 1.177 0.546 0.536 0.887 0.549 1.802 2.339
F
IR
4
0.0
7.191 4.345 8.108 4.264 4.341 3.82 0.839 7.012 17.356 7.406 7.555 3.251 4.921 7.997 2.76 7.406 4.021 6.966 9.891 14.484 8.939 24.331
A
5 0.789 2.554 2.068 2.225 1.493
0.0
0.304 1.234 0.649 1.292 1.095 0.384 0.947 0.113 2.465 1.15 1.51 0.17 0.418 0.72 2.856 1.172 6.828
Q
FWEKY
6 1.406 1.847 1.65 1.049 0.689 1.51 0.42 1.34 1.629 0.794 0.612 1.517 0.251 1.032 10.684 1.281 1.361
0.0
0.023 0.977 1.674 1.15 1.775
W
YME


Binding energies

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL PTR SEP TPO optimum
1 94.490 94.264 94.440 94.883 95.615 94.188 93.938 94.422 94.426 94.420 94.136 94.087 94.069 94.126 94.178 95.274 94.402 93.955 93.931 94.427 93.521 94.284 94.469
y
YEW
2 94.490 93.581 93.160 93.119 93.679 93.185 92.862 93.779 93.969 94.252 92.883 94.923 92.610 92.871 95.571 93.810 93.596 91.770 93.000 94.551 93.417 93.535 95.199
W
3 94.490 92.583 94.212 94.368 93.877 94.245 94.121 94.763 93.817 92.593 93.254 93.183 93.166 92.462 94.219 94.536 93.633 93.009 92.998 93.346 93.011 94.258 93.997
F
RI
4 93.964 94.503 94.147 97.499 94.088 93.633 93.106 94.812 96.180 106.027 95.731 98.665 91.980 93.874 101.475 94.666 96.969 94.855 95.059 99.362 96.953 97.637 108.419
M
5 94.496 93.791 94.658 94.833 95.171 93.676 93.976 94.977 93.247 93.643 93.536 94.085 93.255 92.639 96.524 94.853 95.072 91.883 92.596 94.273 94.025 94.650 99.172
W
6 94.300 94.567 94.559 93.910 93.576 94.349 93.256 94.269 94.279 93.583 93.398 94.226 93.017 93.161 97.413 94.203 94.058 91.949 91.997 93.798 92.071 94.052 93.823
W
Yy


Stability energies

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL PTR SEP TPO optimum
1 390.962 391.425 391.167 390.245 390.771 390.110 390.866 390.822 391.270 391.892 391.558 390.926 391.540 392.095 390.821 390.854 391.066 392.076 391.066 391.682 390.621 391.103 391.626
Q
D
2 390.616 389.795 390.212 389.801 390.264 390.186 389.573 390.575 389.541 391.644 390.071 391.328 389.952 390.451 391.980 390.670 390.157 389.950 390.132 391.699 390.913 389.986 393.860
H
ERDWMs
3 390.962 389.876 390.847 390.925 390.513 391.269 390.806 391.595 390.658 389.816 390.768 390.002 390.616 390.148 390.913 391.247 390.337 391.102 389.870 390.594 389.908 391.387 392.092
I
YRyKF
4 390.728 391.933 391.160 394.901 391.229 389.811 390.673 391.805 393.727 404.854 395.501 397.105 391.460 392.802 399.161 391.701 394.156 394.726 394.091 397.217 397.798 396.451 412.119
Q
5 390.996 391.205 391.789 392.085 392.381 390.794 391.307 391.713 390.574 392.128 391.548 391.204 391.390 390.948 393.212 391.761 392.583 390.471 390.321 392.451 391.910 392.569 398.439
Y
WHQ
6 390.585 390.862 390.078 390.674 390.116 390.152 390.018 390.693 390.102 391.348 390.976 390.606 390.739 390.855 401.190 389.997 390.049 390.103 389.180 391.320 389.560 391.111 392.145
Y
y

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