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Help mscoring

 

One and three code letter for natural and phosphorylated amino acids.                           (Please read this help!)

1N5Z2

Normalized sum of energies

 

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL optimum
1 0.361 0.228 0.354 0.424 0.344 0.336 0.354 0.421 0.254 0.312 0.364 0.241 0.115 0.117 0.304 0.361 0.354
0.0
0.28 0.354
W
MFRKHYPIQCNETVASLGD
2 0.973 0.76 1.159 1.281 0.973 1.135 1.137 0.982 0.832 1.054 0.209 0.556
0.0
0.327 1.398 1.066 0.987 0.444 0.602 1.125
M
LFW
3 2.292 0.383 2.601 1.662 2.204 1.557 1.6 2.968 1.489 1.63 1.819 2.069 1.817 2.093
0.0
1.538 2.51 1.546 2.271 2.069
P
R
4 0.218
0.0
0.139 0.338 0.235 0.128 0.178 0.208 0.448 0.252 0.228 0.089 0.218 0.218 0.218 0.218 0.228 0.208 0.218 0.238
R
KQNEGWAMFPSYLTCVIDH
5 3.43
0.0
3.851 3.953 3.057 2.988 3.707 3.72 2.737 2.789 1.603 2.147 1.256 1.633 3.5 3.645 3.307 2.581 2.166 3.564
R
6 1.462 0.7 1.508 2.984 1.28 0.174 2.705 2.042 3.437 0.777 0.678 1.234 0.335 2.921
0.0
2.245 1.832 3.081 4.08 0.918
P
QM
7 0.28
0.0
0.31 0.59 0.28 0.262 0.52 0.24 0.04 0.29 0.24 0.11 0.2 0.2 0.23 0.27 0.28 0.19 0.21 0.3
R
HKWMFYPGLQSACTIVN
8 3.299
0.0
1.742 6.541 2.94 4.308 5.748 3.67 0.886 1.804 1.392 2.126 2.111 1.154 4.142 3.918 3.318 1.568 1.792 2.616
R
9 0.02 1.616 0.01 0.925 1.536 2.033 1.8
0.0
0.862 0.861 1.383 1.569 1.351 1.971 0.801 0.04 1.32 2.678
0.0
1.317
G
YNAS
10 3.119 2.865 2.762 3.482 3.266 3.233 3.546 3.399 2.843 2.639 2.645 2.929 1.624 0.862 3.637 3.332 2.67
0.0
2.836 2.812
W


Binding energies

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL optimum
1 -5.470 -5.780 -5.480 -5.410 -5.490 -5.500 -5.480 -5.410 -5.580 -5.530 -5.470 -5.690 -5.800 -5.710 -5.530 -5.470 -5.480 -5.970 -5.710 -5.480
W
MRFYKHIPQCNETVALS
2 -5.470 -5.880 -5.530 -5.320 -5.470 -5.490 -5.330 -5.400 -5.760 -5.480 -6.560 -5.950 -6.830 -6.100 -5.320 -5.380 -5.370 -6.260 -5.980 -5.380
M
L
3 -4.530 -6.650 -4.490 -5.390 -4.580 -5.290 -5.300 -3.750 -5.430 -5.400 -5.310 -6.420 -5.340 -5.030 -6.720 -5.310 -4.160 -5.740 -5.000 -4.680
P
RK
4 -5.510 -5.840 -5.590 -5.390 -5.510 -5.600 -5.580 -5.520 -5.280 -5.480 -5.500 -5.640 -5.510 -5.510 -5.510 -5.510 -5.500 -5.520 -5.510 -5.490
R
KQNEGWACMFPSYLTVID
5 -5.570 -9.370 -5.460 -5.050 -6.230 -6.080 -5.300 -5.280 -6.270 -6.360 -7.410 -6.860 -7.750 -7.460 -5.500 -5.360 -5.730 -6.670 -7.080 -5.440
R
6 -4.530 -5.430 -4.700 -3.010 -4.810 -5.880 -3.300 -3.660 -4.120 -5.150 -6.130 -4.910 -5.780 -4.590 -5.850 -3.770 -4.020 -4.490 -3.480 -5.400
L
QPM
7 -5.510 -5.790 -5.480 -5.200 -5.510 -5.530 -5.270 -5.550 -5.750 -5.500 -5.550 -5.680 -5.590 -5.590 -5.560 -5.520 -5.510 -5.600 -5.580 -5.490
R
HKWMFYPGLQSACTIVN
8 -5.630 -9.120 -7.670 -2.860 -6.210 -6.060 -4.590 -5.050 -8.810 -7.480 -7.890 -6.970 -8.360 -9.350 -5.540 -5.090 -5.810 -8.960 -8.700 -6.410
F
RW
9 -5.510 -7.130 -5.520 -5.130 -5.780 -6.150 -5.190 -5.530 -6.140 -6.180 -5.630 -5.970 -5.640 -5.830 -5.690 -5.490 -5.640 -5.470 -5.530 -5.660
R
10 -5.520 -6.190 -5.870 -5.150 -5.580 -5.730 -5.420 -5.270 -6.330 -6.410 -6.320 -6.040 -7.440 -8.280 -5.420 -5.300 -6.100 -10.560 -7.880 -6.180
W


Stability energies

# ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL optimum
1 25.340 24.900 25.240 25.320 25.280 25.300 25.360 25.430 25.230 25.410 25.450 25.060 25.070 25.100 25.280 25.320 25.380 24.610 25.100 25.440
W
RKMFY
2 25.340 24.940 25.420 25.410 25.420 25.340 25.560 26.000 25.530 25.190 24.180 24.850 24.420 24.680 25.970 25.560 25.230 25.060 24.860 25.370
L
MF
3 26.310 24.890 27.160 25.920 26.800 26.310 26.030 27.430 25.890 26.160 25.950 26.050 26.270 26.100 22.650 25.630 26.830 25.980 26.300 26.450
P
4 25.350 25.080 25.930 25.420 25.820 25.830 25.330 25.920 25.850 25.640 25.470 25.300 25.520 25.260 24.660 25.520 25.530 25.360 25.380 25.530
P
R
5 22.710 19.130 23.420 23.210 23.070 22.500 23.020 23.520 22.390 22.020 20.880 21.640 20.710 21.070 22.300 23.070 22.640 22.170 21.490 22.930
R
6 25.970 25.160 26.640 28.410 26.240 25.490 27.430 27.130 29.640 25.890 25.710 26.120 25.160 28.850 23.880 27.030 26.620 29.300 29.990 25.890
P
7 25.350 24.670 25.640 25.620 25.610 24.970 25.650 25.890 25.180 25.500 25.370 24.590 25.310 24.880 24.150 25.400 25.240 24.990 24.970 25.230
P
K
8 21.080 18.610 19.320 24.020 20.460 20.780 22.290 21.800 18.260 19.540 18.980 20.360 18.870 17.470 22.410 21.440 20.730 18.140 18.140 20.410
F
9 25.090 23.170 23.840 24.930 24.700 24.250 25.200 24.190 24.110 24.050 24.350 24.310 24.950 23.940 23.720 25.020 24.550 24.800 24.780 24.480
R
10 24.310 23.000 23.930 24.790 24.340 23.610 24.450 24.700 23.470 24.040 23.600 23.080 22.540 21.620 25.050 24.660 24.020 19.190 21.830 24.140
W

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