ADAN database

 

Scanning Information, ROC parameters and
Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: SHO1_1QKX-11.PDB
Scoring matrix: SHO1_1QKX-11_mat
Uniprot code: P40073
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAA
Foldx wt ligand score: 16.67
Foldx random average score for Saccharomyces cerevisiae: 14.375

Available information for P40073 in MINT (Nov 2008):
Nš of interacting proteins: 56
 Proteins belonging to other specie: 0
Nš of interactions described: 68
 Interactions with other species: 0

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having weird amino acids: 230
Total scanned proteins: 5078
 Total fragments: 2186557
Proteins after random average filtering: 5078
 Total fragments: 936397
Proteins after disorder filtering: 3369
 Total fragments: 69535
Proteins after pattern filtering: 1536
 Total fragments: 7975
Proteins after MINT filtering: 22
 Total fragments: 242

ROC parameters:
TPR= 0.393
FPR= 0.301
ACC= 0.695
SPC= 0.699
MCC= 0.021

Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAA

16.67

3.59

0.00

Best peptides

WDWKHER

0.00

4.21

0.62

         
Interactors      
P11710

KPLPLTP

12.39

-3.72

-7.31

Q06604

NKPKPTP

9.64

-3.12

-6.71

KGPRMPS

10.06

-3.09

-6.68

GPRMPSR

10.70

-4.09

-7.68

P24583

NAPLPPQ

11.61

-2.04

-5.63

LPPQPRK

13.32

-2.67

-6.26

ANAPLPP

13.39

-2.73

-6.32

Q06412

NSPKSPR

10.07

-2.69

-6.28

RRPPPPP

11.09

-4.58

-8.17

RPPPPPP

11.51

-6.00

-9.59

P40036

LPTTPGI

13.46

-1.45

-5.04

PPLSPKS

14.20

-1.26

-4.85

P09620

PISKPSI

9.66

-3.37

-6.96

PDPSNIP

9.84

-2.01

-5.60

NPISKPS

13.97

-0.43

-4.02

P13186

LPEREPP

10.92

-4.75

-8.34

IPAALPP

11.74

-3.23

-6.82

PSYVPNR

11.99

-2.63

-6.22

P38753

YPSNLPI

10.71

-3.27

-6.86

LPIQHPT

10.88

-3.51

-7.10

NTPVMPP

11.53

-0.57

-4.16

Q08229

NPTIPPR

13.21

-4.25

-7.84

PTPVQPG

13.92

0.53

-3.06

LPTPVQP

14.25

-4.06

-7.65

Q00246

KNLPRLP

13.15

-2.55

-6.14

LPRLPTP

13.42

-4.00

-7.59

P32448

RVPTDSP

10.82

-1.14

-4.73

Q04439

SKPKEPM

10.38

-0.83

-4.42

KKPAPPP

10.60

-3.55

-7.14

NIPTPPQ

11.17

-0.79

-4.38

P35197

RPDHLPP

9.85

-4.04

-7.63

PDHLPPS

11.21

-3.11

-6.70

SRPDHLP

11.64

0.00

-3.59

Q12446

PPPPHRH

10.15

-2.61

-6.20

NPFPFPI

10.50

-2.90

-6.49

NRPVPPP

10.84

-2.50

-6.09

P08018

RAPRRPL

10.88

-3.95

-7.54

PPPRLPS

11.02

-4.69

-8.28

HPTRPNV

12.00

-1.27

-4.86

P39969

RAPKPPS

8.76

-3.62

-7.21

PIPSPTR

11.85

-3.64

-7.23

VSPRRAP

12.04

-2.69

-6.28

Q03790

PTATPSP

12.83

-1.12

-4.71

GFPSAPQ

13.11

-0.25

-3.84

TPSPFRP

13.69

-2.38

-5.97

P41809

YPTTPYP

11.19

-2.60

-6.19

PYPSPNS

13.75

-0.95

-4.54

PSAPVAI

14.18

-0.66

-4.25

Q05080

KPDKPRP

8.57

-4.17

-7.76

PDKPRPI

11.72

-1.42

-5.01

RQKPDKP

11.76

-1.57

-5.16

P25344

NTPGPSP

13.85

0.10

-3.49

P53297

PEGKPPQ

7.62

-2.85

-6.44

MYMPFQP

9.55

-2.96

-6.55

NISPHVP

9.74

-2.06

-5.65

P22147

PTPPHPM

9.39

-1.43

-5.02

QPISFPP

9.99

-2.80

-6.39

LHPLHPH

10.38

-1.73

-5.32

 


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