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Matrix information:
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ADAN-name: NBP2_1YN8-6.PDB
Scoring matrix: NBP2_1YN8-6_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 16.18
Foldx random average score for Saccharomyces cerevisiae: 19.463 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 5078
Total fragments: 2171454
Proteins after random average filtering: 5078
Total fragments: 1391561
Proteins after disorder filtering: 3207
Total fragments: 102103
Proteins after pattern filtering: 1621
Total fragments: 17641
Proteins after MINT filtering: 7
Total fragments: 197
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAAA |
16.18
|
7.70 |
0.00 |
| Best peptides |
RRRMGRYPPK |
0.00
|
-3.65 |
-11.35 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
PKREAPKPPA |
11.15
|
0.72 |
-6.98 |
|
RRYPQTPSYY |
11.84
|
2.85 |
-4.85 |
|
YPQTPSYYYD |
12.16
|
0.29 |
-7.41 |
| P53933 |
RRRPPPPPIP |
10.82
|
-0.73 |
-8.43 |
|
RPPPPPIPST |
10.88
|
-0.13 |
-7.83 |
|
VSYPGNPTSR |
11.59
|
-0.71 |
-8.41 |
| P48562 |
QFPRGPMHPN |
5.86
|
-4.44 |
-12.14 |
|
YHHQGPSPSP |
7.70
|
-2.84 |
-10.54 |
|
FQNIGPAPRP |
8.49
|
-4.01 |
-11.71 |
| Q03497 |
TGLPGSPQVS |
11.83
|
-0.58 |
-8.28 |
|
HKQHKPKVKP |
12.28
|
1.72 |
-5.98 |
|
RPAPKPPSSA |
12.31
|
1.22 |
-6.48 |
| Q12469 |
RLAPSAPATK |
12.60
|
1.87 |
-5.83 |
|
PHRLAPSAPA |
12.85
|
1.55 |
-6.15 |
|
HRLAPSAPAT |
13.39
|
0.65 |
-7.05 |
| P25293 |
PHNTPASVLN |
17.54
|
3.11 |
-4.59 |
|
NAPTPHNTPA |
19.21
|
3.73 |
-3.97 |
| P08018 |
RAPRRPLSTQ |
11.39
|
0.57 |
-7.13 |
|
HPTRPNVAPH |
12.70
|
0.01 |
-7.69 |
|
GPPPRLPSDK |
14.74
|
4.13 |
-3.57 |
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