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Matrix information:
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ADAN-name: NBP2_1SEM-4.PDB
Scoring matrix: NBP2_1SEM-4_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 21.62
Foldx random average score for Saccharomyces cerevisiae: 19.588 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 5078
Total fragments: 2171454
Proteins after random average filtering: 5078
Total fragments: 1023265
Proteins after disorder filtering: 3055
Total fragments: 67215
Proteins after pattern filtering: 1602
Total fragments: 15725
Proteins after MINT filtering: 7
Total fragments: 192
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAAA |
21.62
|
2.11 |
0.00 |
| Best peptides |
MIPRRFRHMR |
0.00
|
-6.55 |
-8.66 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
APKREAPKPP |
10.40
|
-5.90 |
-8.01 |
|
EPSTPSRPVP |
11.77
|
-4.74 |
-6.85 |
|
SPSYPSIFRR |
12.20
|
-3.74 |
-5.85 |
| P53933 |
VRTRRRPPPP |
8.30
|
-8.86 |
-10.97 |
|
RTRRRPPPPP |
10.16
|
-9.61 |
-11.72 |
|
PPPLPNRQLP |
10.58
|
-6.05 |
-8.16 |
| P48562 |
SPLNPYRPHH |
9.59
|
-6.56 |
-8.67 |
|
QPQRTAPKPP |
10.16
|
-5.57 |
-7.68 |
|
QTMRQAPKRP |
11.00
|
-6.68 |
-8.79 |
| Q03497 |
IPSRPAPKPP |
8.60
|
-6.28 |
-8.39 |
|
LPPIPPTKSK |
11.53
|
-2.36 |
-4.47 |
|
KFIPSRPAPK |
12.35
|
-3.50 |
-5.61 |
| Q12469 |
RPHRLAPSAP |
12.06
|
-5.30 |
-7.41 |
|
RLAPSAPATK |
14.47
|
-1.73 |
-3.84 |
|
ELKPFPRPSD |
14.80
|
-2.29 |
-4.40 |
| P25293 |
APTPHNTPAS |
15.99
|
-2.67 |
-4.78 |
|
TPHNTPASVL |
17.06
|
-0.80 |
-2.91 |
|
DNAPTPHNTP |
18.00
|
0.02 |
-2.09 |
| P08018 |
HPTRPNVAPH |
9.77
|
-5.32 |
-7.43 |
|
IVDGPPPRLP |
11.88
|
-4.65 |
-6.76 |
|
PPPRLPSDKF |
12.08
|
-2.14 |
-4.25 |
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