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Matrix information:
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ADAN-name: NBP2_1SEM-2.PDB
Scoring matrix: NBP2_1SEM-2_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 21.07
Foldx random average score for Saccharomyces cerevisiae: 19.720 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 5078
Total fragments: 2171454
Proteins after random average filtering: 5078
Total fragments: 1019254
Proteins after disorder filtering: 3110
Total fragments: 70942
Proteins after pattern filtering: 1610
Total fragments: 16236
Proteins after MINT filtering: 7
Total fragments: 188
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAAA |
21.07
|
6.11 |
0.00 |
| Best peptides |
MLPRPFRRMR |
0.00
|
-4.57 |
-10.68 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
SPSYPSIFRR |
10.35
|
-4.91 |
-11.02 |
|
EPSTPSRPVP |
10.85
|
-5.29 |
-11.40 |
|
APKREAPKPP |
11.07
|
-4.96 |
-11.07 |
| P53933 |
VRTRRRPPPP |
10.39
|
-4.38 |
-10.49 |
|
TRRRPPPPPI |
10.51
|
-4.36 |
-10.47 |
|
RRRPPPPPIP |
11.46
|
-3.89 |
-10.00 |
| P48562 |
SPLNPYRPHH |
9.21
|
-6.71 |
-12.82 |
|
NPYRPHHNMI |
10.20
|
-4.68 |
-10.79 |
|
PPISAPRAPY |
10.47
|
-4.92 |
-11.03 |
| Q03497 |
HKQHKPKVKP |
11.20
|
-3.90 |
-10.01 |
|
IPSRPAPKPP |
11.60
|
-6.33 |
-12.44 |
|
LPPIPPTKSK |
11.64
|
-3.46 |
-9.57 |
| Q12469 |
RPHRLAPSAP |
12.63
|
-4.90 |
-11.01 |
|
ELKPFPRPSD |
13.13
|
-3.29 |
-9.40 |
|
RLAPSAPATK |
13.24
|
-1.84 |
-7.95 |
| P25293 |
APTPHNTPAS |
16.26
|
-2.10 |
-8.21 |
|
TPHNTPASVL |
16.37
|
-1.71 |
-7.82 |
|
NAPTPHNTPA |
17.29
|
-0.81 |
-6.92 |
| P08018 |
HPTRPNVAPH |
9.85
|
-5.87 |
-11.98 |
|
PLSTQHPTRP |
11.29
|
-4.71 |
-10.82 |
|
PPPRLPSDKF |
12.38
|
-4.45 |
-10.56 |
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