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Matrix information:
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ADAN-name: NBP2_1SEM-18.PDB
Scoring matrix: NBP2_1SEM-18_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAAA
Foldx wt ligand score: 21.4
Foldx random average score for Saccharomyces cerevisiae: 19.301 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 5078
Total fragments: 2171454
Proteins after random average filtering: 5078
Total fragments: 910564
Proteins after disorder filtering: 3124
Total fragments: 65390
Proteins after pattern filtering: 1499
Total fragments: 8531
Proteins after MINT filtering: 7
Total fragments: 96
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAGAAAA |
21.40
|
2.56 |
0.00 |
| Best peptides |
RPPIPSIFFR |
0.00
|
-1.91 |
-4.47 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
RYPQTPSYYY |
10.50
|
-3.89 |
-6.45 |
|
SPSYPSIFRR |
11.05
|
-1.96 |
-4.52 |
|
ASPSYPSIFR |
11.85
|
-1.17 |
-3.73 |
| P53933 |
RPPPPPIPST |
13.60
|
-0.78 |
-3.34 |
|
PPPIPSTQKP |
13.69
|
-0.53 |
-3.09 |
|
RRPPPPPIPS |
15.62
|
-5.43 |
-7.99 |
| P48562 |
NPYRPHHNMI |
11.80
|
-1.64 |
-4.20 |
|
LNPYRPHHNM |
13.24
|
-1.57 |
-4.13 |
|
PSPSPLNPYR |
13.58
|
-0.72 |
-3.28 |
| Q03497 |
LPPIPPTKSK |
10.15
|
-3.82 |
-6.38 |
|
FPSKNPLKNS |
13.55
|
-5.55 |
-8.11 |
|
KPSKPEAKSK |
14.04
|
-4.00 |
-6.56 |
| Q12469 |
RPHRLAPSAP |
16.23
|
-2.70 |
-5.26 |
|
APSAPATKNH |
16.36
|
-1.55 |
-4.11 |
|
LAPSAPATKN |
16.96
|
-0.67 |
-3.23 |
| P25293 |
TPHNTPASVL |
18.08
|
1.51 |
-1.05 |
|
NAPTPHNTPA |
18.58
|
-0.63 |
-3.19 |
| P08018 |
PPRLPSDKFS |
10.79
|
-5.05 |
-7.61 |
|
PPPRLPSDKF |
15.31
|
1.25 |
-1.31 |
|
APRRPLSTQH |
16.62
|
-2.26 |
-4.82 |
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