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Matrix information:
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ADAN-name: NBP2_1GCQ-28.PDB
Scoring matrix: NBP2_1GCQ-28_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 24.92
Foldx random average score for Saccharomyces cerevisiae: 19.930 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 5078
Total fragments: 2171454
Proteins after random average filtering: 5078
Total fragments: 1050914
Proteins after disorder filtering: 2936
Total fragments: 42227
Proteins after pattern filtering: 1427
Total fragments: 7441
Proteins after MINT filtering: 7
Total fragments: 91
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAAA |
24.92
|
-0.37 |
0.00 |
| Best peptides |
RRRFFTWPHR |
0.00
|
-8.51 |
-8.14 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
SPSYPSIFRR |
12.61
|
-11.00 |
-10.63 |
|
PQTPSYYYDR |
13.09
|
-5.83 |
-5.46 |
|
SRTEPSTPSR |
14.20
|
-10.73 |
-10.36 |
| P53933 |
RVAPPPLPNR |
8.44
|
-12.82 |
-12.45 |
|
RPPPPPIPST |
12.88
|
-12.37 |
-12.00 |
|
PPPPIPSTQK |
14.23
|
-8.21 |
-7.84 |
| P48562 |
KQPQSPLSSQ |
14.56
|
-7.10 |
-6.73 |
|
NPYRPHHNMI |
14.87
|
-11.32 |
-10.95 |
|
RTAPKPPISA |
15.68
|
-7.48 |
-7.11 |
| Q03497 |
LPPIPPTKSK |
11.89
|
-9.21 |
-8.84 |
|
KPSKPEAKSK |
12.34
|
-9.09 |
-8.72 |
|
QHKPKVKPSK |
12.83
|
-8.26 |
-7.89 |
| Q12469 |
RLAPSAPATK |
11.66
|
-9.07 |
-8.70 |
|
LKPFPRPSDD |
18.86
|
-6.87 |
-6.50 |
|
PFPRPSDDDY |
19.61
|
-5.40 |
-5.03 |
| P25293 |
PHNTPASVLN |
18.22
|
-6.70 |
-6.33 |
|
PTPHNTPASV |
19.30
|
-7.84 |
-7.47 |
| P08018 |
RAPRRPLSTQ |
13.06
|
-9.19 |
-8.82 |
|
PTRPNVAPHK |
15.31
|
-5.85 |
-5.48 |
|
GPPPRLPSDK |
15.46
|
-8.10 |
-7.73 |
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