|
Matrix information:
(Help)
ADAN-name: NBP2_1GCQ-19.PDB
Scoring matrix: NBP2_1GCQ-19_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAA
Foldx wt ligand score: 16.35
Foldx random average score for Saccharomyces cerevisiae: 15.733 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 5078
Total fragments: 2176532
Proteins after random average filtering: 5078
Total fragments: 908193
Proteins after disorder filtering: 3083
Total fragments: 43822
Proteins after pattern filtering: 1429
Total fragments: 6217
Proteins after MINT filtering: 6
Total fragments: 72
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAGAAA |
16.35
|
-0.08 |
0.00 |
| Best peptides |
RRSKMGFHW |
0.00
|
-3.37 |
-3.29 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
RPVPPDSSY |
8.66
|
-7.24 |
-7.16 |
|
KRSKPLPPQ |
8.94
|
-6.25 |
-6.17 |
|
RRYPQTPSY |
9.00
|
-6.71 |
-6.63 |
| P53933 |
PPPIPSTQK |
13.64
|
-6.13 |
-6.05 |
|
RRRPPPPPI |
14.42
|
-9.56 |
-9.48 |
|
PPLPNRQLP |
14.45
|
-7.96 |
-7.88 |
| P48562 |
RQAPKRPDA |
11.24
|
-3.09 |
-3.01 |
|
NPYRPHHNM |
12.17
|
-6.53 |
-6.45 |
|
GVAKPKKPA |
12.24
|
-4.27 |
-4.19 |
| Q03497 |
KKSFPSKNP |
10.05
|
-8.90 |
-8.82 |
|
KPSKPEAKS |
10.18
|
-4.68 |
-4.60 |
|
KQHKPKVKP |
11.04
|
-8.30 |
-8.22 |
| P08018 |
PRLPSDKFS |
12.23
|
-3.19 |
-3.11 |
|
PRRPLSTQH |
12.36
|
-3.57 |
-3.49 |
|
APRRPLSTQ |
12.51
|
-5.48 |
-5.40 |
| Q12469 |
HRLAPSAPA |
13.35
|
-4.29 |
-4.21 |
|
RLAPSAPAT |
13.57
|
-5.00 |
-4.92 |
|
LKPFPRPSD |
14.69
|
-5.63 |
-5.55 |
|
