|
Matrix information:
(Help)
ADAN-name: NBP2_1GCQ-16.PDB
Scoring matrix: NBP2_1GCQ-16_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAA
Foldx wt ligand score: 16.91
Foldx random average score for Saccharomyces cerevisiae: 22.060 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 5078
Total fragments: 2176532
Proteins after random average filtering: 5078
Total fragments: 1015951
Proteins after disorder filtering: 3247
Total fragments: 91249
Proteins after pattern filtering: 1606
Total fragments: 12277
Proteins after MINT filtering: 7
Total fragments: 133
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAGAAA |
16.91
|
2.76 |
0.00 |
| Best peptides |
FHRLKSREG |
0.00
|
-2.39 |
-5.15 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
KSASPPASP |
14.48
|
0.13 |
-2.63 |
|
APTKPNPQG |
14.62
|
-3.26 |
-6.02 |
|
SGRRYPQTP |
15.16
|
-3.85 |
-6.61 |
| P53933 |
YNDLPMELP |
13.53
|
-2.43 |
-5.19 |
|
RRPPPPPIP |
14.60
|
-4.13 |
-6.89 |
|
TRRRPPPPP |
15.04
|
-6.40 |
-9.16 |
| P48562 |
QFPRGPMHP |
10.98
|
-2.98 |
-5.74 |
|
PSPLNPYRP |
12.20
|
-4.60 |
-7.36 |
|
TAPKPPISA |
12.54
|
-4.05 |
-6.81 |
| Q03497 |
GKFIPSRPA |
9.54
|
-3.33 |
-6.09 |
|
KKSFPSKNP |
11.88
|
-2.93 |
-5.69 |
|
KQHKPKVKP |
12.34
|
-4.09 |
-6.85 |
| Q12469 |
PHRLAPSAP |
13.15
|
-1.79 |
-4.55 |
|
HRLAPSAPA |
14.93
|
-0.46 |
-3.22 |
|
PFPRPSDDD |
15.34
|
0.04 |
-2.72 |
| P25293 |
NAPTPHNTP |
14.31
|
-0.42 |
-3.18 |
|
APTPHNTPA |
19.87
|
-1.05 |
-3.81 |
|
PTPHNTPAS |
21.79
|
1.03 |
-1.73 |
| P08018 |
QHPTRPNVA |
11.64
|
-1.98 |
-4.74 |
|
LSTQHPTRP |
14.68
|
-3.68 |
-6.44 |
|
HPTRPNVAP |
14.97
|
-2.89 |
-5.65 |
|
