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Matrix information:
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ADAN-name: NBP2_1GCQ-1.PDB
Scoring matrix: NBP2_1GCQ-1_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 24.93
Foldx random average score for Saccharomyces cerevisiae: 21.152 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 2101
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 5078
Total fragments: 2171454
Proteins after random average filtering: 5078
Total fragments: 1369385
Proteins after disorder filtering: 3173
Total fragments: 85280
Proteins after pattern filtering: 1601
Total fragments: 15981
Proteins after MINT filtering: 7
Total fragments: 185
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAAA |
24.93
|
0.50 |
0.00 |
| Best peptides |
FRRHRWRRRF |
0.00
|
-8.11 |
-8.61 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
KRSKPLPPQL |
12.26
|
-10.83 |
-11.33 |
|
GRRYPQTPSY |
14.23
|
-6.52 |
-7.02 |
|
PSSSPPPIPK |
14.79
|
-5.41 |
-5.91 |
| P53933 |
VRTRRRPPPP |
11.31
|
-10.81 |
-11.31 |
|
TRRRPPPPPI |
11.75
|
-8.88 |
-9.38 |
|
RRRPPPPPIP |
12.16
|
-7.34 |
-7.84 |
| P48562 |
FQNIGPAPRP |
12.45
|
-9.73 |
-10.23 |
|
QTMRQAPKRP |
13.16
|
-10.06 |
-10.56 |
|
MRQAPKRPDA |
13.40
|
-12.08 |
-12.58 |
| Q03497 |
HKQHKPKVKP |
12.09
|
-8.81 |
-9.31 |
|
HKPKVKPSKP |
12.74
|
-5.28 |
-5.78 |
|
FIPSRPAPKP |
13.90
|
-9.74 |
-10.24 |
| Q12469 |
ELKPFPRPSD |
15.82
|
-5.79 |
-6.29 |
|
LKPFPRPSDD |
16.58
|
-7.19 |
-7.69 |
|
RLAPSAPATK |
17.32
|
-5.25 |
-5.75 |
| P25293 |
PTPHNTPASV |
18.72
|
-5.28 |
-5.78 |
|
DNAPTPHNTP |
20.82
|
-2.68 |
-3.18 |
| P08018 |
PLSTQHPTRP |
12.40
|
-11.42 |
-11.92 |
|
STQHPTRPNV |
14.63
|
-7.93 |
-8.43 |
|
IVDGPPPRLP |
15.68
|
-10.31 |
-10.81 |
|
