ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1SEM-20.PDB
Scoring matrix: BEM1-D2_1SEM-20_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAA
Foldx wt ligand score: 19.35
Foldx random average score for Saccharomyces cerevisiae: 18.346

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
 Total fragments: 3206999
Proteins after random average filtering: 7178
 Total fragments: 1371694
Proteins after disorder filtering: 4535
 Total fragments: 63648
Proteins after pattern filtering: 1965
 Total fragments: 6649
Proteins after MINT filtering: 6
 Total fragments: 38


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAGAAA

19.35

-2.30

0.00

Best peptides

RIHRIGMHD

0.00

-4.82

-2.52

         
Interactors      
P38041

VPPQPGSKK

15.99

-7.40

-5.10

VQPPQSPSF

16.18

-4.13

-1.83

IFESPGRAP

16.27

-7.10

-4.80

P50090

PTLPPNQHR

16.51

-6.54

-4.24

RIVTPTLPP

16.61

-7.43

-5.13

LPWSPESKN

18.28

-4.98

-2.68

P32618

VPIVPGNNT

17.52

-6.27

-3.97

PSPKPSHKR

17.86

-5.48

-3.18

KVPAKEPSP

17.95

-5.64

-3.34

Q03497

KKSFPSKNP

14.26

-8.79

-6.49

IPSRPAPKP

15.15

-10.84

-8.54

PPIPPTKSK

15.50

-6.90

-4.60

P39969

LPPQPGSKK

14.73

-8.05

-5.75

AQPPKSPLL

15.72

-5.38

-3.08

LSPIPSPTR

16.27

-5.61

-3.31

P22224

FPSTPGTID

15.25

-6.19

-3.89

PMTPSTPTF

16.73

-5.73

-3.43

 


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