ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1SEM-17.PDB
Scoring matrix: BEM1-D2_1SEM-17_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAA
Foldx wt ligand score: 11.82
Foldx random average score for Saccharomyces cerevisiae: 14.475

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
 Total fragments: 3206999
Proteins after random average filtering: 7178
 Total fragments: 1629165
Proteins after disorder filtering: 4644
 Total fragments: 90828
Proteins after pattern filtering: 2055
 Total fragments: 8339
Proteins after MINT filtering: 9
 Total fragments: 61


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAGAAA

11.82

-0.35

0.00

Best peptides

YPFRNGLSF

0.00

-6.90

-6.55

         
Interactors      
P38041

IFESPGRAP

10.42

-3.23

-2.88

VPPQPGSKK

10.66

-4.57

-4.22

VQPPQSPSF

10.91

-3.01

-2.66

P21268

NLSKPISPP

14.29

-3.17

-2.82

P11433

SNPSATPNM

13.79

-3.24

-2.89

P50090

LPWSPESKN

12.56

-5.00

-4.65

RIVTPTLPP

12.77

-5.67

-5.32

P32618

KVPAKEPSP

11.17

-3.10

-2.75

KEPSPKPSH

11.19

-2.44

-2.09

VPIVPGNNT

11.47

-4.33

-3.98

Q03497

HKPKVKPSK

10.58

-0.81

-0.46

KPSKPEAKS

10.66

-5.36

-5.01

IPSRPAPKP

10.72

-7.67

-7.32

P39969

LPPQPGSKK

9.68

-5.04

-4.69

VSPRRAPKP

11.38

-5.69

-5.34

YPSPAQPPK

11.55

-6.29

-5.94

P22224

YQSPMTPST

9.92

0.12

0.47

FPSTPGTID

12.13

-2.48

-2.13

PMTPSTPTF

13.34

-1.29

-0.94

P35735

LASPHFNPQ

14.10

-0.52

-0.17

PHFNPQSSE

14.21

-2.49

-2.14

 


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