ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1SEM-1.PDB
Scoring matrix: BEM1-D2_1SEM-1_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 25.68
Foldx random average score for Saccharomyces cerevisiae: 22.826

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
 Total fragments: 3199821
Proteins after random average filtering: 7178
 Total fragments: 1821627
Proteins after disorder filtering: 4442
 Total fragments: 83979
Proteins after pattern filtering: 2246
 Total fragments: 17655
Proteins after MINT filtering: 9
 Total fragments: 123


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAAA

25.68

-2.19

0.00

Best peptides

WLWRYLRRRY

0.00

-8.89

-6.70

         
Interactors      
P38041

SPGRAPKPPS

17.05

-9.05

-6.86

PKPPSYPSPV

17.12

-7.89

-5.70

FKLVPPQPGS

17.56

-5.04

-2.85

P21268

SKPISPPPSL

16.39

-6.46

-4.27

PLNLSKPISP

16.43

-8.33

-6.14

KPISPPPSLK

19.65

-7.57

-5.38

P11433

NSNPSATPNM

22.29

-5.26

-3.07

P50090

ALPWSPESKN

17.65

-6.54

-4.35

IVTPTLPPNQ

17.65

-8.50

-6.31

VTPTLPPNQH

19.44

-6.47

-4.28

P32618

AKEPSPKPSH

16.36

-4.86

-2.67

YKANPVISPY

16.46

-8.20

-6.01

VGPKVPAKEP

17.16

-5.92

-3.73

Q03497

HKPKVKPSKP

11.63

-8.16

-5.97

GKFIPSRPAP

14.27

-7.91

-5.72

PKVKPSKPEA

14.65

-6.39

-4.20

P39969

YCFKLLPPQP

12.50

-8.83

-6.64

VSPRRAPKPP

14.59

-11.02

-8.83

QPPKSPLLNN

16.12

-7.54

-5.35

P22224

QSPMTPSTPT

20.37

-7.17

-4.98

NGYQSPMTPS

20.94

-5.76

-3.57

PSTPTFPNAN

22.00

-6.30

-4.11

P35735

PLASPHFNPQ

17.74

-6.40

-4.21

LASPHFNPQS

20.54

-6.14

-3.95

PHFNPQSSEK

21.88

-5.99

-3.80

 


    Comments or questions on the site? Send a mail to adandatabase@umh.es                                                     
DISCLAIMER