ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1GCQ-9.PDB
Scoring matrix: BEM1-D2_1GCQ-9_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAA
Foldx wt ligand score: 16.09
Foldx random average score for Saccharomyces cerevisiae: 12.452

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
 Total fragments: 3214177
Proteins after random average filtering: 7178
 Total fragments: 1464248
Proteins after disorder filtering: 4524
 Total fragments: 68655
Proteins after pattern filtering: 2216
 Total fragments: 13269
Proteins after MINT filtering: 9
 Total fragments: 95


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAA

16.09

-2.73

0.00

Best peptides

YRPIPPRF

0.00

-7.99

-5.26

         
Interactors      
P38041

FKLVPPQP

7.25

-9.17

-6.44

RAPKPPSY

7.71

-9.43

-6.70

SPVQPPQS

9.34

-5.89

-3.16

P21268

KPISPPPS

9.39

-6.57

-3.84

SKPISPPP

10.69

-5.94

-3.21

NLSKPISP

11.07

-5.99

-3.26

P11433

PSATPNME

10.79

-6.56

-3.83

P50090

RIVTPTLP

7.65

-8.32

-5.59

LPWSPESK

10.13

-6.25

-3.52

TPTLPPNQ

10.20

-7.34

-4.61

P32618

VPNLSPRL

7.68

-7.99

-5.26

GPKVPAKE

7.98

-7.92

-5.19

NPVISPYS

8.75

-5.46

-2.73

Q03497

LPPIPPTK

6.71

-8.44

-5.71

GKFIPSRP

7.04

-8.95

-6.22

APTTPNRT

7.06

-8.36

-5.63

P39969

FKLLPPQP

6.72

-9.49

-6.76

SPAQPPKS

7.42

-6.99

-4.26

RAPKPPSY

7.71

-9.43

-6.70

P22224

FPSTPGTI

7.76

-5.88

-3.15

TPSTPTFP

9.86

-6.69

-3.96

TPTFPNAN

10.73

-5.10

-2.37

P35735

SPHFNPQS

9.70

-3.84

-1.11

PLASPHFN

12.29

-4.78

-2.05

 


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