ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1GCQ-29.PDB
Scoring matrix: BEM1-D2_1GCQ-29_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 18.03
Foldx random average score for Saccharomyces cerevisiae: 12.366

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
 Total fragments: 3199821
Proteins after random average filtering: 7178
 Total fragments: 1299274
Proteins after disorder filtering: 3901
 Total fragments: 43694
Proteins after pattern filtering: 2005
 Total fragments: 11181
Proteins after MINT filtering: 8
 Total fragments: 75


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAAA

18.03

-1.47

0.00

Best peptides

RYPPRMPFRH

0.00

-14.03

-12.56

         
Interactors      
P38041

RAPKPPSYPS

8.78

-10.35

-8.88

CFKLVPPQPG

9.05

-9.37

-7.90

KPPSYPSPVQ

9.49

-8.85

-7.38

P21268

SKPISPPPSL

10.73

-8.48

-7.01

PISPPPSLKK

11.19

-8.33

-6.86

LNLSKPISPP

11.50

-7.04

-5.57

P50090

VTPTLPPNQH

7.51

-10.32

-8.85

ALPWSPESKN

10.73

-8.06

-6.59

PTLPPNQHRG

10.85

-8.90

-7.43

P32618

EPSPKPSHKR

8.26

-9.39

-7.92

EPAPLPSHYS

9.05

-9.12

-7.65

DVPIVPGNNT

9.87

-7.56

-6.09

Q03497

SFPSKNPLKN

6.60

-9.34

-7.87

FIPSRPAPKP

7.61

-9.47

-8.00

VKPSKPEAKS

8.11

-9.59

-8.12

P39969

AQPPKSPLLN

7.18

-10.06

-8.59

CFKLLPPQPG

7.23

-10.71

-9.24

RAPKPPSYPS

8.78

-10.35

-8.88

P22224

MTPSTPTFPN

6.75

-10.80

-9.33

IFPSTPGTID

10.20

-8.51

-7.04

STPTFPNANG

10.84

-8.24

-6.77

P35735

ASPHFNPQSS

10.20

-5.73

-4.26

PLASPHFNPQ

11.72

-6.90

-5.43

 


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