ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1GCQ-26.PDB
Scoring matrix: BEM1-D2_1GCQ-26_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAA
Foldx wt ligand score: 17.62
Foldx random average score for Saccharomyces cerevisiae: 14.037

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
 Total fragments: 3206999
Proteins after random average filtering: 7178
 Total fragments: 1299321
Proteins after disorder filtering: 4276
 Total fragments: 65026
Proteins after pattern filtering: 2207
 Total fragments: 15512
Proteins after MINT filtering: 9
 Total fragments: 108


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAA

17.62

-2.06

0.00

Best peptides

DDRPRRFRR

0.00

-3.31

-1.25

         
Interactors      
P38041

FESPGRAPK

8.28

-8.09

-6.03

GRAPKPPSY

8.41

-7.91

-5.85

VQPPQSPSF

9.62

-7.26

-5.20

P21268

KPISPPPSL

10.28

-5.51

-3.45

SKPISPPPS

10.61

-5.92

-3.86

LSKPISPPP

12.16

-6.25

-4.19

P11433

SNPSATPNM

12.22

-7.81

-5.75

P50090

PTLPPNQHR

11.20

-7.48

-5.42

VTPTLPPNQ

11.88

-5.92

-3.86

IVTPTLPPN

12.26

-8.97

-6.91

P32618

KEPSPKPSH

8.38

-6.81

-4.75

SEPAPLPSH

8.87

-8.38

-6.32

PSPKPSHKR

10.04

-5.99

-3.93

Q03497

KFIPSRPAP

6.84

-8.03

-5.97

HKPKVKPSK

8.07

-7.04

-4.98

PLPPIPPTK

8.81

-7.12

-5.06

P39969

RRAPKPPSY

7.68

-8.63

-6.57

LSPIPSPTR

9.07

-6.59

-4.53

YPSPAQPPK

9.97

-5.99

-3.93

P22224

TPSTPTFPN

12.44

-5.44

-3.38

STPTFPNAN

12.54

-4.97

-2.91

PMTPSTPTF

12.74

-7.63

-5.57

P35735

LASPHFNPQ

13.00

-3.79

-1.73

PLASPHFNP

13.74

-3.81

-1.75

SPHFNPQSS

14.00

-3.17

-1.11

 


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