|
Matrix information:
(Help)
ADAN-name: BEM1-D2_1GCQ-20.PDB
Scoring matrix: BEM1-D2_1GCQ-20_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAA
Foldx wt ligand score: 15.54
Foldx random average score for Saccharomyces cerevisiae: 15.511 Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
Proteins belonging to other specie: 1
Nš of interactions described: 42
Interactions with other species: 2
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
Total fragments: 3206999
Proteins after random average filtering: 7178
Total fragments: 1435247
Proteins after disorder filtering: 4486
Total fragments: 64100
Proteins after pattern filtering: 1951
Total fragments: 7153
Proteins after MINT filtering: 6
Total fragments: 46
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAGAAA |
15.54
|
-2.69 |
0.00 |
| Best peptides |
FPFFRGMHF |
0.00
|
-6.45 |
-3.76 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| P38041 |
VPPQPGSKK |
9.73
|
-6.80 |
-4.11 |
|
VQPPQSPSF |
12.80
|
-4.84 |
-2.15 |
|
PPQPGSKKG |
13.45
|
-6.49 |
-3.80 |
| P50090 |
PTLPPNQHR |
12.78
|
-6.26 |
-3.57 |
|
LPWSPESKN |
13.40
|
-5.09 |
-2.40 |
| P32618 |
VPIVPGNNT |
11.57
|
-6.92 |
-4.23 |
|
PSPKPSHKR |
12.32
|
-5.52 |
-2.83 |
|
ANPVISPYS |
14.04
|
-3.81 |
-1.12 |
| Q03497 |
KPSKPEAKS |
11.97
|
-6.83 |
-4.14 |
|
IPSRPAPKP |
12.24
|
-10.29 |
-7.60 |
|
HKPKVKPSK |
12.32
|
-5.69 |
-3.00 |
| P39969 |
LPPQPGSKK |
8.54
|
-7.75 |
-5.06 |
|
AQPPKSPLL |
12.78
|
-6.02 |
-3.33 |
|
VSPRRAPKP |
13.17
|
-7.25 |
-4.56 |
| P22224 |
TPTFPNANG |
14.49
|
-6.95 |
-4.26 |
|
YQSPMTPST |
14.79
|
-4.52 |
-1.83 |
|
PMTPSTPTF |
15.36
|
-5.63 |
-2.94 |
|
