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Matrix information:
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ADAN-name: BEM1-D2_1GCQ-16.PDB
Scoring matrix: BEM1-D2_1GCQ-16_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAA
Foldx wt ligand score: 16.76
Foldx random average score for Saccharomyces cerevisiae: 16.126 Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
Proteins belonging to other specie: 1
Nš of interactions described: 42
Interactions with other species: 2
Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
Total fragments: 3206999
Proteins after random average filtering: 7178
Total fragments: 1777641
Proteins after disorder filtering: 4703
Total fragments: 119796
Proteins after pattern filtering: 2267
Total fragments: 14561
Proteins after MINT filtering: 9
Total fragments: 110
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAGAAA |
16.76
|
2.87 |
0.00 |
| Best peptides |
WRPLNSHWA |
0.00
|
-0.49 |
-3.36 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| P38041 |
PPQSPSFNN |
10.07
|
1.69 |
-1.18 |
|
FKLVPPQPG |
10.99
|
-3.12 |
-5.99 |
|
CFKLVPPQP |
11.05
|
-2.55 |
-5.42 |
| P21268 |
LNLSKPISP |
12.88
|
0.00 |
-2.87 |
|
LSKPISPPP |
15.10
|
-1.06 |
-3.93 |
|
NLSKPISPP |
15.73
|
-1.58 |
-4.45 |
| P11433 |
TNSNPSATP |
12.59
|
0.72 |
-2.15 |
|
SNPSATPNM |
15.72
|
1.53 |
-1.34 |
| P50090 |
TPTLPPNQH |
11.14
|
-2.22 |
-5.09 |
|
RIVTPTLPP |
12.68
|
-1.51 |
-4.38 |
|
ASTALPWSP |
13.84
|
0.58 |
-2.29 |
| P32618 |
PAPLPSHYS |
7.65
|
-2.03 |
-4.90 |
|
PSPKPSHKR |
7.71
|
0.01 |
-2.86 |
|
VSYSPSNEP |
10.60
|
-0.12 |
-2.99 |
| Q03497 |
KKSFPSKNP |
7.88
|
-0.45 |
-3.32 |
|
FPSKNPLKN |
8.28
|
-2.67 |
-5.54 |
|
KQHKPKVKP |
9.69
|
-3.40 |
-6.27 |
| P39969 |
FKLLPPQPG |
9.24
|
-5.14 |
-8.01 |
|
LSPIPSPTR |
9.65
|
-1.11 |
-3.98 |
|
QPPKSPLLN |
10.55
|
-1.61 |
-4.48 |
| P22224 |
FPSTPGTID |
10.95
|
0.22 |
-2.65 |
|
MTPSTPTFP |
11.75
|
0.82 |
-2.05 |
|
TPTFPNANG |
12.98
|
-1.71 |
-4.58 |
| P35735 |
PLASPHFNP |
9.40
|
0.52 |
-2.35 |
|
ASPHFNPQS |
13.55
|
0.39 |
-2.48 |
|
SPHFNPQSS |
14.48
|
0.92 |
-1.95 |
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