ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D1_JO8-LCK-28.PDB
Scoring matrix: BEM1-D1_JO8-LCK-28_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 16.19
Foldx random average score for Saccharomyces cerevisiae: 13.097

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
 Total fragments: 3199821
Proteins after random average filtering: 7178
 Total fragments: 1716876
Proteins after disorder filtering: 4346
 Total fragments: 66227
Proteins after pattern filtering: 2137
 Total fragments: 11928
Proteins after MINT filtering: 9
 Total fragments: 85


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAAA

16.19

-3.23

0.00

Best peptides

YPRKHRHPNR

0.00

-2.51

0.72

         
Interactors      
P38041

PPQSPSFNNR

7.23

-9.47

-6.25

KPPSYPSPVQ

8.26

-7.93

-4.71

KLVPPQPGSK

8.44

-8.48

-5.26

P21268

KPISPPPSLK

6.01

-9.37

-6.14

PISPPPSLKK

9.44

-8.84

-5.62

SKPISPPPSL

11.17

-7.01

-3.78

P11433

NSNPSATPNM

10.73

-5.83

-2.61

P50090

TPTLPPNQHR

6.92

-10.20

-6.97

RIVTPTLPPN

11.44

-10.02

-6.79

IVTPTLPPNQ

11.64

-6.39

-3.16

P32618

KEPSPKPSHK

8.01

-8.93

-5.71

PSPKPSHKRN

8.29

-8.56

-5.34

TPSTSPSGRR

8.45

-8.32

-5.10

Q03497

KPSKPEAKSK

5.23

-9.29

-6.06

LPPIPPTKSK

6.60

-10.08

-6.86

QPLPPIPPTK

6.96

-8.94

-5.71

P39969

QPPKSPLLNN

6.80

-9.29

-6.06

KLLPPQPGSK

8.16

-8.85

-5.63

SPEENPITSM

8.47

-6.12

-2.90

P22224

TPSTPTFPNA

8.98

-8.45

-5.22

TPTFPNANGV

9.57

-8.15

-4.93

FPSTPGTIDS

11.47

-7.87

-4.64

P35735

LASPHFNPQS

10.19

-9.63

-6.41

SPHFNPQSSE

11.34

-4.52

-1.29

PHFNPQSSEK

12.79

-6.59

-3.36

 


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