ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D1_JO8-LCK-17.PDB
Scoring matrix: BEM1-D1_JO8-LCK-17_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAA
Foldx wt ligand score: 19.13
Foldx random average score for Saccharomyces cerevisiae: 18.638

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: True
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7178
 Total fragments: 3206999
Proteins after random average filtering: 7178
 Total fragments: 1430226
Proteins after disorder filtering: 4584
 Total fragments: 84872
Proteins after pattern filtering: 2030
 Total fragments: 7612
Proteins after MINT filtering: 7
 Total fragments: 58


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAGAAA

19.13

-2.26

0.00

Best peptides

YRFMNGRSR

0.00

-0.66

1.60

         
Interactors      
P38041

VQPPQSPSF

14.33

-3.73

-1.47

YPSPVQPPQ

15.35

-4.84

-2.58

VPPQPGSKK

15.61

-5.55

-3.29

P11433

SNPSATPNM

18.06

-1.22

1.04

P50090

LPWSPESKN

17.01

-5.19

-2.93

PTLPPNQHR

17.70

-7.65

-5.39

P32618

KVPAKEPSP

15.68

-4.84

-2.58

KEPSPKPSH

16.11

-5.28

-3.02

PSPKPSHKR

16.21

-6.69

-4.43

Q03497

HKPKVKPSK

14.13

-3.19

-0.93

THAPTTPNR

14.72

-3.84

-1.58

PPIPPTKSK

15.30

-5.62

-3.36

P39969

LPPQPGSKK

14.13

-6.36

-4.10

YPSPAQPPK

15.79

-5.27

-3.01

AQPPKSPLL

16.44

-3.31

-1.05

P22224

YQSPMTPST

13.83

-3.15

-0.89

TPSTPTFPN

16.89

-3.70

-1.44

PMTPSTPTF

17.18

-2.90

-0.64

 


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