|
Matrix information:
(Help)
ADAN-name: 2P4R2.PDB
Scoring matrix: 2P4R2_mat
Uniprot code: O55043
Genome source: Rattus norvegicus
Wild-type ligand: RPPRPSRPPPPTP
Foldx wt ligand score: 3.54
Foldx random average score for Rattus norvegicus: 13.460 Available information for O55043 in MINT (Nov 2008):
Nš of interacting proteins: 5
Proteins belonging to other specie: 0
Nš of interactions described: 6
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Rattus norvegicus: 15006
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 3052
Total scanned proteins: 11953
Total fragments: 5508495
Proteins after random average filtering: 11945
Total fragments: 2767113
Proteins after disorder filtering: 8456
Total fragments: 204190
Proteins after pattern filtering: 6082
Total fragments: 94488
Proteins after MINT filtering: 5
Total fragments: 648
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
RPPRPSRPPPPTP |
3.54
|
-18.51 |
0.00 |
| Best peptides |
RYKRPRRHPMDIP |
0.00
|
-19.74 |
-1.23 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| P35465 |
HGSKPLPPNPEEK |
9.02
|
-11.98 |
6.53 |
|
PPAPPMRNTSTMI |
9.23
|
-13.62 |
4.89 |
|
VQDKPPAPPMRNT |
9.46
|
-12.26 |
6.25 |
| Q9QX74 |
GFVIPPPAPPPPP |
6.56
|
-15.44 |
3.07 |
|
VFSLPSQSPAGDL |
7.50
|
-12.06 |
6.45 |
|
IPPPPQSVPPSPP |
7.58
|
-15.89 |
2.62 |
| Q9Z272 |
RQPPGPVPVPSLP |
11.14
|
-12.28 |
6.23 |
|
LRQPPGPVPVPSL |
11.24
|
-11.89 |
6.62 |
|
PSLPSERAEHTLM |
11.31
|
-10.62 |
7.89 |
| Q9JLU4 |
RPKRRPRPSGPDS |
6.21
|
-12.11 |
6.40 |
|
GPGRRAESPCAPL |
7.37
|
-15.88 |
2.63 |
|
IPPPPQTAPPPPP |
7.38
|
-16.63 |
1.88 |
| Q9WV48 |
SYDRPSFLPPGPG |
6.51
|
-14.46 |
4.05 |
|
IPPPPTTSPPEPP |
7.33
|
-15.88 |
2.63 |
|
LPPRPLVHPLTGK |
7.79
|
-14.51 |
4.00 |
|
