ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: 2DRM2.PDB
Scoring matrix: 2DRM2_mat
Uniprot code: P19706
Genome source: Acanthamoeba castellanii
Wild-type ligand: AKPVPPPRGAKPAPPPR
Foldx wt ligand score: 8.56
Foldx random average score for Acanthamoeba castellanii: 16.831

Available information for P19706 in MINT (Nov 2008):
Nš of interacting proteins: 0
 Proteins belonging to other specie: 0
Nš of interactions described: 0
 Interactions with other species: 0

Genome scanning information:
Subcellular location: True
Proteins in genome Acanthamoeba castellanii: 132
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 54
Total scanned proteins: 77
 Total fragments: 26532
Proteins after random average filtering: 77
 Total fragments: 13259
Proteins after disorder filtering: 20
 Total fragments: 442
Proteins after pattern filtering: 10
 Total fragments: 277
Proteins after MINT filtering: 0
 Total fragments: 0


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AKPVPPPRGAKPAPPPR

8.56

-19.49

0.00

Best peptides

RRRNMFGFMHRKIRDDR

0.00

-20.63

-1.14

         
Interactors      

 


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