ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: 2DRK2.PDB
Scoring matrix: 2DRK2_mat
Uniprot code: P19706
Genome source: Acanthamoeba castellanii
Wild-type ligand: RPKPVPPPRG
Foldx wt ligand score: 1.97
Foldx random average score for Acanthamoeba castellanii: 9.253

Available information for P19706 in MINT (Nov 2008):
Nš of interacting proteins: 0
 Proteins belonging to other specie: 0
Nš of interactions described: 0
 Interactions with other species: 0

Genome scanning information:
Subcellular location: True
Proteins in genome Acanthamoeba castellanii: 132
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 54
Total scanned proteins: 77
 Total fragments: 27071
Proteins after random average filtering: 77
 Total fragments: 13385
Proteins after disorder filtering: 26
 Total fragments: 733
Proteins after pattern filtering: 16
 Total fragments: 329
Proteins after MINT filtering: 0
 Total fragments: 0


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

RPKPVPPPRG

1.97

-12.22

0.00

Best peptides

RGRPEIPGRR

0.00

-10.99

1.23

         
Interactors      

 


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