|
Matrix information:
(Help)
ADAN-name: 1SEM2.PDB
Scoring matrix: 1SEM2_mat
Uniprot code: P29355
Genome source: Caenorhabditis elegans
Wild-type ligand: PPPVPPR
Foldx wt ligand score: 2.33
Foldx random average score for Caenorhabditis elegans: 9.020 Available information for P29355 in MINT (Nov 2008):
Nš of interacting proteins: 13
Proteins belonging to other specie: 0
Nš of interactions described: 14
Interactions with other species: 0
Genome scanning information:
Subcellular location: True
Proteins in genome Caenorhabditis elegans: 23626
Proteins located in other compartments: 1
Proteins considered as fragments or having non-standard amino acids: 524
Total scanned proteins: 23101
Total fragments: 9992466
Proteins after random average filtering: 23101
Total fragments: 4710287
Proteins after disorder filtering: 15297
Total fragments: 418653
Proteins after pattern filtering: 8669
Total fragments: 89563
Proteins after MINT filtering: 11
Total fragments: 173
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
PPPVPPR |
2.33
|
-9.56 |
0.00 |
| Best peptides |
RPIRPGR |
0.00
|
-7.30 |
2.26 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q20771 |
PPSRPFS |
3.70
|
-7.78 |
1.78 |
|
PQSCPGG |
5.87
|
-5.27 |
4.29 |
|
PQQYPPP |
6.48
|
-5.29 |
4.27 |
| Q21848 |
PETFPLC |
6.34
|
-5.01 |
4.55 |
|
PNSDPRK |
6.56
|
-4.80 |
4.76 |
|
PNNTPET |
7.17
|
-4.51 |
5.05 |
| Q20473 |
PPPLPPR |
1.54
|
-9.41 |
0.15 |
|
APPLPSR |
2.00
|
-7.31 |
2.25 |
|
PPLPPRR |
2.63
|
-8.89 |
0.67 |
| P91482 |
PPARPRP |
3.62
|
-8.68 |
0.88 |
|
ARPRPGP |
4.11
|
-7.58 |
1.98 |
|
VPVPPAR |
4.54
|
-6.36 |
3.20 |
| Q9XVW8 |
APPLPPK |
4.05
|
-8.01 |
1.55 |
|
PNMAPNR |
4.30
|
-6.24 |
3.32 |
|
QPNMAPN |
4.82
|
-4.70 |
4.86 |
| Q9N5D3 |
APPLPPR |
1.76
|
-8.15 |
1.41 |
|
PKLHPRR |
3.25
|
-6.61 |
2.95 |
|
SPLTPSR |
3.41
|
-6.14 |
3.42 |
| Q93203 |
PPPLPPR |
1.54
|
-9.41 |
0.15 |
|
PPLPPRS |
5.41
|
-6.54 |
3.02 |
|
RPPAPYD |
5.60
|
-6.14 |
3.42 |
| Q9XU98 |
KPTDPPR |
2.60
|
-7.78 |
1.78 |
|
PTDPPRP |
7.68
|
-4.78 |
4.78 |
|
PKPTDPP |
8.97
|
-2.64 |
6.92 |
| Q23158 |
RDPPPPV |
5.03
|
-6.94 |
2.62 |
|
MRDPPPP |
5.31
|
-6.44 |
3.12 |
|
PPPPVIR |
5.82
|
-5.02 |
4.54 |
| Q19019 |
APPLPPR |
1.76
|
-8.15 |
1.41 |
|
PPPLPPK |
3.83
|
-9.41 |
0.15 |
|
PPLPPRL |
4.96
|
-6.80 |
2.76 |
| O45539 |
LPSHPRI |
5.87
|
-6.06 |
3.50 |
|
HPRIPSI |
5.98
|
-6.44 |
3.12 |
|
SLPSHPR |
6.71
|
-3.63 |
5.93 |
|
