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Matrix information:
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ADAN-name: NBP2_1YN8-9.PDB
Scoring matrix: NBP2_1YN8-9_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAA
Foldx wt ligand score: 17.68
Foldx random average score for Saccharomyces cerevisiae: 13.874 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3214721
Proteins after random average filtering: 7179
Total fragments: 1398471
Proteins after disorder filtering: 4276
Total fragments: 54635
Proteins after pattern filtering: 2109
Total fragments: 11651
Proteins after MINT filtering: 7
Total fragments: 106
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAA |
17.68
|
-2.08 |
0.00 |
| Best peptides |
RRFRPFRH |
0.00
|
-7.21 |
-5.13 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
KRSKPLPP |
7.74
|
-6.47 |
-4.39 |
|
RYPQTPSY |
9.69
|
-3.94 |
-1.86 |
|
RPVPPDSS |
9.92
|
-4.72 |
-2.64 |
| P53933 |
RRRPPPPP |
6.45
|
-7.78 |
-5.70 |
|
RRPPPPPI |
6.74
|
-7.55 |
-5.47 |
|
RPPPPPIP |
6.87
|
-8.50 |
-6.42 |
| P53914 |
VKPLPPKE |
8.67
|
-6.92 |
-4.84 |
|
KNVKPLPP |
9.75
|
-5.96 |
-3.88 |
|
LPPIDPKD |
10.55
|
-5.93 |
-3.85 |
| P48562 |
MRQAPKRP |
8.81
|
-5.50 |
-3.42 |
|
QFPRGPMH |
9.23
|
-5.92 |
-3.84 |
|
SPLNPYRP |
9.88
|
-4.41 |
-2.33 |
| Q03497 |
FPSKNPLK |
8.44
|
-5.31 |
-3.23 |
|
LPPIPPTK |
8.53
|
-6.65 |
-4.57 |
|
GKFIPSRP |
8.64
|
-7.05 |
-4.97 |
| P08018 |
RAPRRPLS |
7.18
|
-8.92 |
-6.84 |
|
RPNVAPHK |
9.45
|
-6.45 |
-4.37 |
|
APRRPLST |
10.75
|
-6.54 |
-4.46 |
| Q12469 |
LKPFPRPS |
9.87
|
-5.35 |
-3.27 |
|
HRLAPSAP |
11.40
|
-3.87 |
-1.79 |
|
ELKPFPRP |
11.59
|
-4.51 |
-2.43 |
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