|
Matrix information:
(Help)
ADAN-name: NBP2_1YN8-7.PDB
Scoring matrix: NBP2_1YN8-7_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AGAAAAAA
Foldx wt ligand score: 14.39
Foldx random average score for Saccharomyces cerevisiae: 10.981 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3214721
Proteins after random average filtering: 7179
Total fragments: 1312110
Proteins after disorder filtering: 4340
Total fragments: 52076
Proteins after pattern filtering: 2018
Total fragments: 11477
Proteins after MINT filtering: 7
Total fragments: 115
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AGAAAAAA |
14.39
|
-0.93 |
0.00 |
| Best peptides |
YFRRWYMW |
0.00
|
-4.45 |
-3.52 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
KPLPPQLL |
7.50
|
-4.76 |
-3.83 |
|
YPQTPSYY |
7.63
|
-4.57 |
-3.64 |
|
KRSKPLPP |
7.82
|
-4.87 |
-3.94 |
| P53933 |
RRPPPPPI |
7.35
|
-4.70 |
-3.77 |
|
RPPPPPIP |
7.39
|
-4.65 |
-3.72 |
|
RRRPPPPP |
7.75
|
-6.16 |
-5.23 |
| P53914 |
VKPLPPKE |
6.47
|
-5.75 |
-4.82 |
|
KPLPPKED |
8.71
|
-3.82 |
-2.89 |
|
KNVKPLPP |
8.73
|
-4.91 |
-3.98 |
| P48562 |
QFPRGPMH |
6.53
|
-4.67 |
-3.74 |
|
MRQAPKRP |
7.67
|
-6.04 |
-5.11 |
|
KPPISAPR |
8.04
|
-3.70 |
-2.77 |
| Q03497 |
FPSKNPLK |
6.91
|
-5.54 |
-4.61 |
|
QHKPKVKP |
7.41
|
-4.66 |
-3.73 |
|
IPSRPAPK |
7.63
|
-3.16 |
-2.23 |
| P08018 |
RAPRRPLS |
7.41
|
-6.51 |
-5.58 |
|
PPPRLPSD |
8.88
|
-4.38 |
-3.45 |
|
QHPTRPNV |
8.96
|
-3.34 |
-2.41 |
| Q12469 |
ELKPFPRP |
7.61
|
-5.12 |
-4.19 |
|
PFPRPSDD |
8.06
|
-6.30 |
-5.37 |
|
KPFPRPSD |
8.78
|
-3.29 |
-2.36 |
|
