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Matrix information:
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ADAN-name: NBP2_1SEM-7.PDB
Scoring matrix: NBP2_1SEM-7_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AGAAAAAA
Foldx wt ligand score: 15.34
Foldx random average score for Saccharomyces cerevisiae: 12.274 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3214721
Proteins after random average filtering: 7179
Total fragments: 1359660
Proteins after disorder filtering: 4356
Total fragments: 55983
Proteins after pattern filtering: 1973
Total fragments: 10275
Proteins after MINT filtering: 7
Total fragments: 126
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AGAAAAAA |
15.34
|
-3.05 |
0.00 |
| Best peptides |
KRRRPPWW |
0.00
|
-11.04 |
-7.99 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
KRSKPLPP |
7.28
|
-7.05 |
-4.00 |
|
KPLPPQLL |
9.10
|
-6.85 |
-3.80 |
|
KREAPKPP |
9.15
|
-6.17 |
-3.12 |
| P53933 |
TRRRPPPP |
6.36
|
-6.43 |
-3.38 |
|
RRPPPPPI |
6.96
|
-6.90 |
-3.85 |
|
RRRPPPPP |
7.12
|
-7.28 |
-4.23 |
| P53914 |
VKPLPPKE |
7.72
|
-7.68 |
-4.63 |
|
KPLPPKED |
10.53
|
-5.78 |
-2.73 |
|
KNVKPLPP |
10.64
|
-6.41 |
-3.36 |
| P48562 |
MRQAPKRP |
8.19
|
-6.61 |
-3.56 |
|
QFPRGPMH |
8.68
|
-6.57 |
-3.52 |
|
NPYRPHHN |
9.44
|
-8.52 |
-5.47 |
| Q03497 |
IPSRPAPK |
8.29
|
-4.83 |
-1.78 |
|
FPSKNPLK |
8.87
|
-5.05 |
-2.00 |
|
HKPKVKPS |
9.35
|
-5.27 |
-2.22 |
| P08018 |
RAPRRPLS |
7.73
|
-10.25 |
-7.20 |
|
PRLPSDKF |
8.94
|
-4.66 |
-1.61 |
|
PRRPLSTQ |
8.96
|
-4.66 |
-1.61 |
| Q12469 |
ELKPFPRP |
9.51
|
-4.87 |
-1.82 |
|
HRLAPSAP |
10.78
|
-5.43 |
-2.38 |
|
PFPRPSDD |
10.83
|
-9.35 |
-6.30 |
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