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Matrix information:
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ADAN-name: NBP2_1SEM-28.PDB
Scoring matrix: NBP2_1SEM-28_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 23.36
Foldx random average score for Saccharomyces cerevisiae: 19.709 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3200363
Proteins after random average filtering: 7179
Total fragments: 1546616
Proteins after disorder filtering: 4259
Total fragments: 61691
Proteins after pattern filtering: 2022
Total fragments: 10194
Proteins after MINT filtering: 8
Total fragments: 108
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAAA |
23.36
|
-2.00 |
0.00 |
| Best peptides |
RRKRRPWPHR |
0.00
|
-10.43 |
-8.43 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
SRTEPSTPSR |
12.12
|
-7.31 |
-5.31 |
|
SPSYPSIFRR |
12.59
|
-7.92 |
-5.92 |
|
KRSKPLPPQL |
13.17
|
-9.29 |
-7.29 |
| P53933 |
RVAPPPLPNR |
10.40
|
-13.97 |
-11.98 |
|
RPPPPPIPST |
12.59
|
-9.42 |
-7.42 |
|
PPPPIPSTQK |
15.34
|
-7.59 |
-5.59 |
| P53914 |
KNVKPLPPKE |
16.39
|
-7.86 |
-5.87 |
|
VKPLPPKEDD |
16.87
|
-8.61 |
-6.61 |
|
PPIDPKDGGR |
17.05
|
-7.27 |
-5.27 |
| P48562 |
LNPYRPHHNM |
13.90
|
-7.75 |
-5.75 |
|
MRQAPKRPDA |
14.72
|
-8.46 |
-6.47 |
|
RTAPKPPISA |
15.15
|
-8.55 |
-6.56 |
| Q03497 |
LPPIPPTKSK |
11.64
|
-8.16 |
-6.17 |
|
KPSKPEAKSK |
12.37
|
-8.61 |
-6.61 |
|
QTHAPTTPNR |
14.10
|
-6.84 |
-4.84 |
| Q12469 |
RLAPSAPATK |
13.34
|
-9.75 |
-7.75 |
|
KPFPRPSDDD |
16.23
|
-5.85 |
-3.85 |
|
HRLAPSAPAT |
17.00
|
-7.67 |
-5.67 |
| P25293 |
PHNTPASVLN |
19.07
|
-6.14 |
-4.14 |
|
PTPHNTPASV |
19.12
|
-5.73 |
-3.74 |
| P08018 |
RAPRRPLSTQ |
11.87
|
-11.25 |
-9.25 |
|
APRRPLSTQH |
15.69
|
-9.69 |
-7.69 |
|
GPPPRLPSDK |
15.83
|
-7.14 |
-5.14 |
|
