|
Matrix information:
(Help)
ADAN-name: NBP2_1SEM-26.PDB
Scoring matrix: NBP2_1SEM-26_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAA
Foldx wt ligand score: 18.19
Foldx random average score for Saccharomyces cerevisiae: 13.872 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3207542
Proteins after random average filtering: 7179
Total fragments: 1372672
Proteins after disorder filtering: 4129
Total fragments: 59413
Proteins after pattern filtering: 2111
Total fragments: 14571
Proteins after MINT filtering: 8
Total fragments: 160
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAA |
18.19
|
-2.07 |
0.00 |
| Best peptides |
RRRHRRRRW |
0.00
|
-11.22 |
-9.15 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
RRYPQTPSY |
9.58
|
-7.71 |
-5.64 |
|
KRSKPLPPQ |
9.59
|
-5.69 |
-3.62 |
|
RSKPLPPQL |
9.84
|
-6.12 |
-4.05 |
| P53933 |
RRRPPPPPI |
7.96
|
-7.31 |
-5.24 |
|
RTRRRPPPP |
8.55
|
-8.98 |
-6.91 |
|
TRRRPPPPP |
9.00
|
-7.32 |
-5.25 |
| P53914 |
KNVKPLPPK |
8.30
|
-7.24 |
-5.17 |
|
KPLPPKEDD |
11.57
|
-4.25 |
-2.18 |
|
NVKPLPPKE |
12.31
|
-4.97 |
-2.90 |
| P48562 |
PLNPYRPHH |
7.35
|
-9.67 |
-7.60 |
|
RQAPKRPDA |
7.44
|
-10.36 |
-8.29 |
|
NGQFPRGPM |
8.37
|
-7.21 |
-5.14 |
| Q03497 |
KFIPSRPAP |
6.63
|
-10.38 |
-8.31 |
|
HKPKVKPSK |
7.48
|
-7.19 |
-5.12 |
|
KVKPSKPEA |
8.84
|
-7.32 |
-5.25 |
| Q12469 |
LKPFPRPSD |
7.24
|
-8.50 |
-6.43 |
|
ELKPFPRPS |
9.60
|
-6.89 |
-4.82 |
|
PHRLAPSAP |
12.77
|
-3.91 |
-1.84 |
| P25293 |
PTPHNTPAS |
12.50
|
-5.81 |
-3.74 |
| P08018 |
TQHPTRPNV |
8.07
|
-7.02 |
-4.95 |
|
DGPPPRLPS |
8.33
|
-8.90 |
-6.83 |
|
GPPPRLPSD |
10.34
|
-8.24 |
-6.17 |
|
