ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: NBP2_1SEM-13.PDB
Scoring matrix: NBP2_1SEM-13_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAA
Foldx wt ligand score: 20.71
Foldx random average score for Saccharomyces cerevisiae: 15.592

Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
 Proteins belonging to other specie: 0
Nš of interactions described: 20
 Interactions with other species: 0

Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
 Total fragments: 3214721
Proteins after random average filtering: 7178
 Total fragments: 1253704
Proteins after disorder filtering: 4165
 Total fragments: 43242
Proteins after pattern filtering: 1914
 Total fragments: 8348
Proteins after MINT filtering: 7
 Total fragments: 76


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAA

20.71

-1.69

0.00

Best peptides

RHRFPPRW

0.00

-10.68

-8.99

         
Interactors      
Q01389

EPSTPSRP

10.96

-4.86

-3.18

YPQTPSYY

11.01

-6.49

-4.80

SPSYPSIF

12.22

-5.91

-4.22

P53933

PPPLPNRQ

8.27

-6.77

-5.08

RPPPPPIP

9.71

-9.57

-7.88

RVAPPPLP

10.54

-8.68

-6.99

P53914

VKPLPPKE

11.29

-7.25

-5.56

KNVKPLPP

12.83

-6.05

-4.37

LPPIDPKD

13.36

-4.95

-3.27

P48562

MRQAPKRP

8.10

-8.66

-6.97

SPLNPYRP

9.61

-5.29

-3.61

LNPYRPHH

11.22

-6.57

-4.88

Q03497

GKFIPSRP

8.13

-5.61

-3.93

APTTPNRT

10.87

-7.32

-5.63

LPPIPPTK

11.89

-6.57

-4.88

P08018

RAPRRPLS

10.11

-11.53

-9.84

STQHPTRP

11.14

-4.49

-2.81

RPNVAPHK

12.49

-7.71

-6.03

Q12469

ELKPFPRP

10.99

-2.88

-1.19

LKPFPRPS

11.98

-7.09

-5.40

KPFPRPSD

14.75

-4.64

-2.95

 


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