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Matrix information:
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ADAN-name: NBP2_1GCQ-5.PDB
Scoring matrix: NBP2_1GCQ-5_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 21.33
Foldx random average score for Saccharomyces cerevisiae: 19.095 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3200363
Proteins after random average filtering: 7179
Total fragments: 1383810
Proteins after disorder filtering: 4458
Total fragments: 82769
Proteins after pattern filtering: 2296
Total fragments: 19434
Proteins after MINT filtering: 8
Total fragments: 184
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAAA |
21.33
|
4.04 |
0.00 |
| Best peptides |
MIWRPPRNHW |
0.00
|
-9.67 |
-13.71 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
PSSSPPPIPK |
12.50
|
-5.00 |
-9.04 |
|
SRPVPPDSSY |
12.54
|
-5.03 |
-9.07 |
|
KRSKPLPPQL |
12.98
|
-9.99 |
-14.03 |
| P53933 |
RTRRRPPPPP |
10.67
|
-9.32 |
-13.36 |
|
KRVAPPPLPN |
11.24
|
-4.97 |
-9.00 |
|
RVAPPPLPNR |
11.34
|
-7.43 |
-11.47 |
| P53914 |
AKNVKPLPPK |
12.15
|
-5.18 |
-9.21 |
|
KNVKPLPPKE |
13.47
|
-4.83 |
-8.87 |
|
NVKPLPPKED |
15.79
|
-4.76 |
-8.79 |
| P48562 |
YHHQGPSPSP |
9.98
|
-5.97 |
-10.00 |
|
FQNIGPAPRP |
10.67
|
-6.31 |
-10.34 |
|
TNGQFPRGPM |
10.78
|
-6.14 |
-10.18 |
| Q03497 |
FIPSRPAPKP |
9.58
|
-6.86 |
-10.90 |
|
EQPLPPIPPT |
13.08
|
-4.16 |
-8.20 |
|
FPSKNPLKNS |
13.10
|
-4.43 |
-8.46 |
| Q12469 |
LAPSAPATKN |
15.30
|
-5.32 |
-9.36 |
|
ELKPFPRPSD |
15.30
|
-4.30 |
-8.34 |
|
PHRLAPSAPA |
15.36
|
-3.37 |
-7.41 |
| P25293 |
DNAPTPHNTP |
15.50
|
-3.95 |
-7.99 |
|
PHNTPASVLN |
15.80
|
-3.32 |
-7.36 |
|
NAPTPHNTPA |
18.41
|
-4.02 |
-8.05 |
| P08018 |
RAPRRPLSTQ |
11.30
|
-7.66 |
-11.70 |
|
IVDGPPPRLP |
11.39
|
-6.63 |
-10.66 |
|
PPPRLPSDKF |
13.36
|
-7.55 |
-11.59 |
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