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Matrix information:
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ADAN-name: NBP2_1GCQ-29.PDB
Scoring matrix: NBP2_1GCQ-29_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 21.64
Foldx random average score for Saccharomyces cerevisiae: 15.620 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3200363
Proteins after random average filtering: 7179
Total fragments: 1377466
Proteins after disorder filtering: 4116
Total fragments: 54866
Proteins after pattern filtering: 1963
Total fragments: 10135
Proteins after MINT filtering: 8
Total fragments: 120
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAAA |
21.64
|
-0.94 |
0.00 |
| Best peptides |
RYRPRRPYFH |
0.00
|
-15.34 |
-14.40 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
RYPQTPSYYY |
9.51
|
-10.52 |
-9.58 |
|
RSKPLPPQLL |
11.11
|
-9.24 |
-8.30 |
|
ASPSYPSIFR |
11.15
|
-9.79 |
-8.85 |
| P53933 |
APPPLPNRQL |
10.85
|
-11.90 |
-10.97 |
|
PPLPNRQLPN |
11.20
|
-8.37 |
-7.43 |
|
RTRRRPPPPP |
11.29
|
-13.71 |
-12.78 |
| P53914 |
AKNVKPLPPK |
11.86
|
-8.19 |
-7.25 |
|
NVKPLPPKED |
12.18
|
-10.19 |
-9.25 |
|
PLPPKEDDEL |
13.30
|
-6.71 |
-5.78 |
| P48562 |
PYRPHHNMIN |
6.98
|
-12.04 |
-11.10 |
|
ISAPRAPYPS |
8.91
|
-11.15 |
-10.22 |
|
LNPYRPHHNM |
9.40
|
-13.09 |
-12.15 |
| Q03497 |
SFPSKNPLKN |
9.70
|
-9.25 |
-8.31 |
|
KPKVKPSKPE |
10.35
|
-7.43 |
-6.49 |
|
FIPSRPAPKP |
11.46
|
-11.42 |
-10.48 |
| Q12469 |
KPFPRPSDDD |
12.21
|
-9.37 |
-8.43 |
|
LKPFPRPSDD |
12.71
|
-6.95 |
-6.02 |
|
ELKPFPRPSD |
12.86
|
-8.50 |
-7.56 |
| P25293 |
NAPTPHNTPA |
15.20
|
-4.64 |
-3.70 |
| P08018 |
GPPPRLPSDK |
9.93
|
-8.82 |
-7.88 |
|
RAPRRPLSTQ |
11.65
|
-10.63 |
-9.70 |
|
PRRPLSTQHP |
11.75
|
-13.19 |
-12.25 |
|
