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Matrix information:
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ADAN-name: NBP2_1GCQ-26.PDB
Scoring matrix: NBP2_1GCQ-26_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAA
Foldx wt ligand score: 17.72
Foldx random average score for Saccharomyces cerevisiae: 13.547 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3207542
Proteins after random average filtering: 7179
Total fragments: 1345010
Proteins after disorder filtering: 4363
Total fragments: 74429
Proteins after pattern filtering: 2187
Total fragments: 15423
Proteins after MINT filtering: 8
Total fragments: 155
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAAA |
17.72
|
-2.03 |
0.00 |
| Best peptides |
DRRKRRSPK |
0.00
|
-8.82 |
-6.79 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
SSSPPPIPK |
8.09
|
-5.69 |
-3.66 |
|
PSYPSIFRR |
8.67
|
-7.33 |
-5.30 |
|
RSKPLPPQL |
9.16
|
-7.10 |
-5.07 |
| P53933 |
RRRPPPPPI |
7.43
|
-7.54 |
-5.51 |
|
RTRRRPPPP |
7.73
|
-6.52 |
-4.49 |
|
TRRRPPPPP |
7.92
|
-8.03 |
-6.00 |
| P53914 |
KNVKPLPPK |
6.13
|
-6.13 |
-4.10 |
|
NVKPLPPKE |
12.03
|
-5.90 |
-3.87 |
|
PIDPKDGGR |
13.37
|
-4.30 |
-2.27 |
| P48562 |
PLNPYRPHH |
6.48
|
-10.93 |
-8.90 |
|
THVQPVAPK |
8.55
|
-3.54 |
-1.51 |
|
NGQFPRGPM |
8.90
|
-7.00 |
-4.97 |
| Q03497 |
HKPKVKPSK |
5.41
|
-6.56 |
-4.53 |
|
KFIPSRPAP |
7.61
|
-9.65 |
-7.62 |
|
PLPPIPPTK |
7.83
|
-7.15 |
-5.12 |
| Q12469 |
ELKPFPRPS |
9.42
|
-7.67 |
-5.64 |
|
LKPFPRPSD |
9.57
|
-9.49 |
-7.46 |
|
PHRLAPSAP |
11.17
|
-6.97 |
-4.94 |
| P25293 |
PTPHNTPAS |
13.42
|
-6.11 |
-4.08 |
|
APTPHNTPA |
13.53
|
-3.45 |
-1.42 |
| P08018 |
PPPRLPSDK |
7.77
|
-6.22 |
-4.19 |
|
PTRPNVAPH |
8.35
|
-7.95 |
-5.92 |
|
APRRPLSTQ |
8.51
|
-6.25 |
-4.22 |
|
