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Matrix information:
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ADAN-name: NBP2_1GCQ-18.PDB
Scoring matrix: NBP2_1GCQ-18_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAAA
Foldx wt ligand score: 21.12
Foldx random average score for Saccharomyces cerevisiae: 19.517 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3200363
Proteins after random average filtering: 7179
Total fragments: 1491641
Proteins after disorder filtering: 4578
Total fragments: 101503
Proteins after pattern filtering: 2248
Total fragments: 14221
Proteins after MINT filtering: 8
Total fragments: 114
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAGAAAA |
21.12
|
1.25 |
0.00 |
| Best peptides |
FHRLKSIRHW |
0.00
|
-1.27 |
-2.52 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
APTKPNPQGH |
15.14
|
-3.98 |
-5.23 |
|
REAPKPPANT |
15.22
|
0.27 |
-0.98 |
|
TEPSTPSRPV |
15.34
|
-3.17 |
-4.42 |
| P53933 |
YNDLPMELPH |
13.17
|
-4.01 |
-5.26 |
|
RRPPPPPIPS |
13.67
|
-4.98 |
-6.23 |
|
KRVAPPPLPN |
14.42
|
-5.04 |
-6.29 |
| P53914 |
VKPLPPKEDD |
12.04
|
-3.14 |
-4.39 |
|
LPPIDPKDGG |
14.11
|
-3.76 |
-5.01 |
|
AKNVKPLPPK |
15.24
|
-2.77 |
-4.02 |
| P48562 |
PSPLNPYRPH |
10.43
|
-4.65 |
-5.90 |
|
LNPYRPHHNM |
10.63
|
-1.57 |
-2.82 |
|
TMRQAPKRPD |
11.59
|
-4.46 |
-5.71 |
| Q03497 |
FPSKNPLKNS |
9.48
|
-4.17 |
-5.42 |
|
KKSFPSKNPL |
11.66
|
-4.18 |
-5.43 |
|
KQHKPKVKPS |
12.38
|
-5.27 |
-6.52 |
| Q12469 |
LKPFPRPSDD |
13.28
|
0.90 |
-0.35 |
|
PHRLAPSAPA |
14.34
|
-5.21 |
-6.46 |
|
PFPRPSDDDY |
14.68
|
2.00 |
0.75 |
| P25293 |
NAPTPHNTPA |
16.36
|
-0.55 |
-1.80 |
| P08018 |
LSTQHPTRPN |
12.39
|
-3.36 |
-4.61 |
|
PPRLPSDKFS |
12.78
|
-3.64 |
-4.89 |
|
HPTRPNVAPH |
15.32
|
-2.80 |
-4.05 |
|
