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Matrix information:
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ADAN-name: NBP2_1GCQ-12.PDB
Scoring matrix: NBP2_1GCQ-12_mat
Uniprot code: Q12163
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAA
Foldx wt ligand score: 11.72
Foldx random average score for Saccharomyces cerevisiae: 9.146 Available information for Q12163 in MINT (Nov 2008):
Nš of interacting proteins: 10
Proteins belonging to other specie: 0
Nš of interactions described: 20
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3214721
Proteins after random average filtering: 7179
Total fragments: 1388882
Proteins after disorder filtering: 4487
Total fragments: 62534
Proteins after pattern filtering: 2080
Total fragments: 11351
Proteins after MINT filtering: 7
Total fragments: 114
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAA |
11.72
|
-1.88 |
0.00 |
| Best peptides |
RWIMKRWR |
0.00
|
-6.85 |
-4.97 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| Q01389 |
PSYPSIFR |
4.95
|
-4.67 |
-2.79 |
|
SSPPPIPK |
6.40
|
-4.00 |
-2.12 |
|
PSTPSRPV |
6.79
|
-5.36 |
-3.48 |
| P53933 |
RRRPPPPP |
5.79
|
-5.36 |
-3.48 |
|
TRRRPPPP |
6.42
|
-4.74 |
-2.86 |
|
VSYPGNPT |
6.55
|
-4.12 |
-2.24 |
| P53914 |
KNVKPLPP |
6.19
|
-5.94 |
-4.06 |
|
NVKPLPPK |
6.92
|
-4.19 |
-2.31 |
|
KPLPPKED |
7.42
|
-4.96 |
-3.08 |
| P48562 |
PYRPHHNM |
5.61
|
-5.36 |
-3.48 |
|
IGPAPRPP |
5.75
|
-5.93 |
-4.05 |
|
RQAPKRPD |
5.90
|
-5.94 |
-4.06 |
| Q03497 |
KFIPSRPA |
2.60
|
-8.10 |
-6.22 |
|
KVKPSKPE |
5.98
|
-4.33 |
-2.45 |
|
KSFPSKNP |
6.26
|
-4.43 |
-2.55 |
| P08018 |
TQHPTRPN |
5.57
|
-6.85 |
-4.97 |
|
DGPPPRLP |
5.82
|
-5.88 |
-4.00 |
|
GPPPRLPS |
7.52
|
-5.62 |
-3.74 |
| Q12469 |
LKPFPRPS |
5.26
|
-6.30 |
-4.42 |
|
ELKPFPRP |
7.62
|
-4.34 |
-2.46 |
|
KPFPRPSD |
7.71
|
-4.70 |
-2.82 |
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