ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1SEM-19.PDB
Scoring matrix: BEM1-D2_1SEM-19_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAGAAA
Foldx wt ligand score: 17.0
Foldx random average score for Saccharomyces cerevisiae: 16.616

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
 Total fragments: 3207542
Proteins after random average filtering: 7179
 Total fragments: 1537201
Proteins after disorder filtering: 4602
 Total fragments: 78109
Proteins after pattern filtering: 2153
 Total fragments: 10015
Proteins after MINT filtering: 9
 Total fragments: 80


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAGAAA

17.00

-0.80

0.00

Best peptides

IPSRFGWSF

0.00

-3.19

-2.39

         
Interactors      
P38041

VPPQPGSKK

11.63

-4.49

-3.69

IFESPGRAP

12.45

-6.30

-5.50

PPQPGSKKG

12.67

-5.95

-5.15

P29366

KRIMPYIPG

13.18

-7.28

-6.48

MPYIPGPVP

14.61

-5.35

-4.55

RIMPYIPGP

16.19

-6.91

-6.11

P21268

LSKPISPPP

15.47

-7.55

-6.75

NLSKPISPP

16.44

-6.51

-5.71

P50090

LPWSPESKN

15.18

-4.13

-3.33

PTLPPNQHR

15.80

-6.78

-5.98

IVTPTLPPN

15.94

-5.37

-4.57

P32618

VPIVPGNNT

12.51

-4.34

-3.54

PNLSPRLSN

14.83

-2.04

-1.24

PSPKPSHKR

15.01

-4.87

-4.07

Q03497

IPSRPAPKP

8.56

-8.58

-7.78

PPIPPTKSK

11.47

-7.25

-6.45

KPSKPEAKS

11.78

-5.46

-4.66

P39969

LPPQPGSKK

11.56

-5.22

-4.42

PPQPGSKKG

12.67

-5.95

-5.15

VSPRRAPKP

12.68

-7.23

-6.43

P22224

FPSTPGTID

13.71

-3.68

-2.88

YQSPMTPST

14.07

-3.83

-3.03

PMTPSTPTF

14.58

-5.02

-4.22

P35735

ASPHFNPQS

15.56

-5.31

-4.51

PHFNPQSSE

15.58

-1.96

-1.16

PLASPHFNP

16.13

-5.84

-5.04

 


    Comments or questions on the site? Send a mail to adandatabase@umh.es                                                     
DISCLAIMER