ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1SEM-11.PDB
Scoring matrix: BEM1-D2_1SEM-11_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAA
Foldx wt ligand score: 18.63
Foldx random average score for Saccharomyces cerevisiae: 15.599

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
 Total fragments: 3221900
Proteins after random average filtering: 7179
 Total fragments: 1377645
Proteins after disorder filtering: 4703
 Total fragments: 85569
Proteins after pattern filtering: 2186
 Total fragments: 10589
Proteins after MINT filtering: 10
 Total fragments: 77


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAA

18.63

1.88

0.00

Best peptides

YRPRHRM

0.00

-2.50

-4.38

         
Interactors      
P38041

RAPKPPS

10.52

-4.57

-6.45

SPGRAPK

10.73

-5.36

-7.24

SPVQPPQ

11.58

-4.13

-6.01

P29366

MPYIPGP

9.10

-6.00

-7.88

PGPVPYV

12.58

-3.36

-5.24

YIPGPVP

13.55

-4.40

-6.28

P21268

KPISPPP

13.20

-4.71

-6.59

SKPISPP

13.27

-2.69

-4.57

PISPPPS

15.48

-4.00

-5.88

P11433

PSATPNM

12.55

-3.26

-5.14

NPSATPN

13.13

-0.82

-2.70

P50090

TPTLPPN

8.78

-4.96

-6.84

PTLPPNQ

15.09

-2.51

-4.39

P32618

VPIVPGN

7.89

-6.25

-8.13

TNPMHPQ

7.91

-1.13

-3.01

PNLSPRL

11.40

-2.50

-4.38

Q03497

IPSRPAP

8.40

-5.12

-7.00

FPSKNPL

8.84

-4.51

-6.39

EQPLPPI

10.07

-4.82

-6.70

P39969

SPRRAPK

10.36

-4.63

-6.51

RAPKPPS

10.52

-4.57

-6.45

QPPKSPL

10.54

-3.30

-5.18

P22224

STPTFPN

13.60

-1.48

-3.36

TPTFPNA

13.84

-4.04

-5.92

FPSTPGT

13.99

-4.06

-5.94

P35735

SPHFNPQ

10.44

-3.15

-5.03

PHFNPQS

15.18

-2.34

-4.22

 


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