ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1GCQ-5.PDB
Scoring matrix: BEM1-D2_1GCQ-5_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 19.62
Foldx random average score for Saccharomyces cerevisiae: 19.506

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
 Total fragments: 3200363
Proteins after random average filtering: 7179
 Total fragments: 1538951
Proteins after disorder filtering: 4475
 Total fragments: 92415
Proteins after pattern filtering: 2292
 Total fragments: 19990
Proteins after MINT filtering: 10
 Total fragments: 142


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAAA

19.62

-0.63

0.00

Best peptides

IKWRRFWPHW

0.00

6.24

6.87

         
Interactors      
P38041

SKSQSNPTSP

12.04

-6.19

-5.56

FKLVPPQPGS

12.20

-4.65

-4.02

GRAPKPPSYP

12.44

-7.05

-6.42

P29366

IMPYIPGPVP

11.46

-5.21

-4.58

KRIMPYIPGP

12.30

-7.23

-6.60

MPYIPGPVPY

17.51

0.32

0.95

P21268

SKPISPPPSL

10.03

-6.25

-5.62

LNLSKPISPP

11.77

-5.60

-4.97

PLNLSKPISP

13.24

-7.17

-6.54

P11433

YTNSNPSATP

12.96

-5.82

-5.19

P50090

ALPWSPESKN

10.63

-8.75

-8.12

VTPTLPPNQH

13.05

-7.67

-7.04

TPTLPPNQHR

15.04

-0.66

-0.03

P32618

AKEPSPKPSH

11.64

-7.82

-7.19

ATNTNPMHPQ

12.01

-7.10

-6.47

PVSYSPSNEP

12.78

-5.86

-5.23

Q03497

HKQHKPKVKP

7.07

-8.56

-7.93

FIPSRPAPKP

9.80

-7.93

-7.30

EQPLPPIPPT

10.57

-4.99

-4.36

P39969

VSPRRAPKPP

9.29

-9.74

-9.11

GKALSPIPSP

9.54

-8.23

-7.60

RRAPKPPSYP

11.10

-7.86

-7.23

P22224

SNGYQSPMTP

15.24

-2.78

-2.15

QSPMTPSTPT

15.26

-5.77

-5.14

NGYQSPMTPS

15.34

-3.71

-3.08

P35735

SPHFNPQSSE

14.36

-3.70

-3.07

PLASPHFNPQ

14.95

-4.65

-4.02

ASPHFNPQSS

18.04

-2.89

-2.26

 


    Comments or questions on the site? Send a mail to adandatabase@umh.es                                                     
DISCLAIMER