ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D2_1GCQ-28.PDB
Scoring matrix: BEM1-D2_1GCQ-28_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 23.04
Foldx random average score for Saccharomyces cerevisiae: 19.914

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
 Total fragments: 3200363
Proteins after random average filtering: 7179
 Total fragments: 1471685
Proteins after disorder filtering: 4240
 Total fragments: 55090
Proteins after pattern filtering: 2036
 Total fragments: 9956
Proteins after MINT filtering: 9
 Total fragments: 69


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAAA

23.04

1.47

0.00

Best peptides

RRRFFPWRIR

0.00

-6.91

-8.38

         
Interactors      
P38041

PPQSPSFNNR

12.45

-10.33

-11.80

KLVPPQPGSK

15.61

-9.03

-10.50

LVPPQPGSKK

16.15

-8.62

-10.09

P29366

YIPGPVPYVT

15.98

-8.59

-10.06

P21268

KPISPPPSLK

13.15

-9.10

-10.57

PISPPPSLKK

15.04

-9.37

-10.84

P50090

TPTLPPNQHR

12.69

-11.96

-13.43

TALPWSPESK

17.43

-4.91

-6.38

RIVTPTLPPN

19.00

-8.76

-10.23

P32618

EPSPKPSHKR

12.49

-10.91

-12.38

TPSTSPSGRR

14.93

-8.29

-9.76

VPIVPGNNTT

15.52

-9.52

-10.99

Q03497

KPSKPEAKSK

13.39

-9.32

-10.79

LPPIPPTKSK

13.54

-9.04

-10.51

PPIPPTKSKT

13.61

-9.55

-11.02

P39969

PKSPLLNNTR

13.20

-10.05

-11.52

ALSPIPSPTR

13.87

-10.61

-12.08

KLLPPQPGSK

15.54

-8.87

-10.34

P22224

STPTFPNANG

16.61

-6.35

-7.82

TPSTPTFPNA

16.87

-9.21

-10.68

SPMTPSTPTF

17.89

-8.42

-9.89

P35735

PHFNPQSSEK

17.58

-7.17

-8.64

LASPHFNPQS

18.49

-6.41

-7.88

SPHFNPQSSE

18.85

-3.79

-5.26

 


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