|
Matrix information:
(Help)
ADAN-name: BEM1-D2_1GCQ-27.PDB
Scoring matrix: BEM1-D2_1GCQ-27_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AGAAAAAAA
Foldx wt ligand score: 16.21
Foldx random average score for Saccharomyces cerevisiae: 16.556 Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
Proteins belonging to other specie: 1
Nš of interactions described: 42
Interactions with other species: 2
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3207542
Proteins after random average filtering: 7179
Total fragments: 1606931
Proteins after disorder filtering: 4687
Total fragments: 108739
Proteins after pattern filtering: 2250
Total fragments: 14684
Proteins after MINT filtering: 10
Total fragments: 102
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AGAAAAAAA |
16.21
|
0.98 |
0.00 |
| Best peptides |
RDKFMRIRR |
0.00
|
6.49 |
5.51 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| P38041 |
PGRAPKPPS |
10.40
|
-4.03 |
-5.01 |
|
RAPKPPSYP |
10.80
|
-4.72 |
-5.70 |
|
SPGRAPKPP |
11.71
|
-2.18 |
-3.16 |
| P29366 |
IMPYIPGPV |
9.91
|
-2.20 |
-3.18 |
|
YIPGPVPYV |
13.42
|
-3.13 |
-4.11 |
|
KRIMPYIPG |
14.89
|
-2.97 |
-3.95 |
| P21268 |
LNLSKPISP |
12.52
|
-1.97 |
-2.95 |
|
LSKPISPPP |
13.53
|
-2.84 |
-3.82 |
|
KPISPPPSL |
14.07
|
-1.94 |
-2.92 |
| P11433 |
NPSATPNME |
15.15
|
-1.72 |
-2.70 |
|
TNSNPSATP |
15.67
|
-1.20 |
-2.18 |
|
SNPSATPNM |
15.73
|
-0.25 |
-1.23 |
| P50090 |
LPWSPESKN |
13.15
|
-2.00 |
-2.98 |
|
ASTALPWSP |
15.27
|
-0.43 |
-1.41 |
|
IVTPTLPPN |
16.37
|
-2.16 |
-3.14 |
| P32618 |
PSTSPSGRR |
12.07
|
-3.19 |
-4.17 |
|
YKANPVISP |
12.60
|
-0.72 |
-1.70 |
|
YSPSNEPIQ |
12.85
|
-1.54 |
-2.52 |
| Q03497 |
NGKFIPSRP |
6.50
|
-2.54 |
-3.52 |
|
KKSFPSKNP |
9.50
|
-2.17 |
-3.15 |
|
IPSRPAPKP |
10.93
|
-2.53 |
-3.51 |
| P39969 |
SPRRAPKPP |
10.26
|
-1.40 |
-2.38 |
|
PRRAPKPPS |
10.78
|
-4.66 |
-5.64 |
|
RAPKPPSYP |
10.80
|
-4.72 |
-5.70 |
| P22224 |
TPTFPNANG |
11.96
|
-0.88 |
-1.86 |
|
GYQSPMTPS |
12.80
|
-1.54 |
-2.52 |
|
MTPSTPTFP |
13.56
|
-2.36 |
-3.34 |
| P35735 |
SPHFNPQSS |
11.60
|
0.46 |
-0.52 |
|
ASPHFNPQS |
13.16
|
-2.43 |
-3.41 |
|
PHFNPQSSE |
15.08
|
-0.50 |
-1.48 |
|
