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Matrix information:
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ADAN-name: BEM1-D1_JO8-LCK-9.PDB
Scoring matrix: BEM1-D1_JO8-LCK-9_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAA
Foldx wt ligand score: 18.51
Foldx random average score for Saccharomyces cerevisiae: 14.396 Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
Proteins belonging to other specie: 1
Nš of interactions described: 42
Interactions with other species: 2
Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
Total fragments: 3214721
Proteins after random average filtering: 7179
Total fragments: 1435583
Proteins after disorder filtering: 4602
Total fragments: 72351
Proteins after pattern filtering: 2158
Total fragments: 11493
Proteins after MINT filtering: 9
Total fragments: 82
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
AAAAAAAA |
18.51
|
-3.49 |
0.00 |
| Best peptides |
FRFGPPRW |
0.00
|
-1.55 |
1.94 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| P38041 |
FKLVPPQP |
10.19
|
-8.52 |
-5.03 |
|
RAPKPPSY |
11.75
|
-9.26 |
-5.77 |
|
QPPQSPSF |
11.78
|
-6.15 |
-2.66 |
| P29366 |
KRIMPYIP |
6.88
|
-8.83 |
-5.34 |
|
YIPGPVPY |
9.81
|
-6.46 |
-2.97 |
|
MPYIPGPV |
10.41
|
-9.47 |
-5.98 |
| P21268 |
NLSKPISP |
11.34
|
-7.17 |
-3.68 |
|
KPISPPPS |
12.09
|
-8.17 |
-4.68 |
|
SKPISPPP |
12.41
|
-6.75 |
-3.26 |
| P50090 |
RIVTPTLP |
12.06
|
-8.50 |
-5.01 |
|
TPTLPPNQ |
12.20
|
-7.76 |
-4.27 |
|
LPWSPESK |
13.08
|
-6.42 |
-2.93 |
| P32618 |
VPNLSPRL |
8.88
|
-7.66 |
-4.17 |
|
VPIVPGNN |
12.07
|
-7.66 |
-4.17 |
|
NPVISPYS |
12.28
|
-6.88 |
-3.39 |
| Q03497 |
GKFIPSRP |
8.08
|
-10.18 |
-6.69 |
|
APTTPNRT |
10.07
|
-8.96 |
-5.47 |
|
FPSKNPLK |
10.33
|
-9.96 |
-6.47 |
| P39969 |
FKLLPPQP |
9.55
|
-9.21 |
-5.72 |
|
QPPKSPLL |
10.02
|
-7.53 |
-4.04 |
|
RRAPKPPS |
11.13
|
-6.29 |
-2.80 |
| P22224 |
FPSTPGTI |
11.23
|
-8.02 |
-4.53 |
|
TPTFPNAN |
12.78
|
-6.13 |
-2.64 |
|
TPSTPTFP |
13.37
|
-7.24 |
-3.75 |
| P35735 |
SPHFNPQS |
14.08
|
-5.73 |
-2.24 |
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