ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D1_JO8-LCK-4.PDB
Scoring matrix: BEM1-D1_JO8-LCK-4_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAAA
Foldx wt ligand score: 17.61
Foldx random average score for Saccharomyces cerevisiae: 15.470

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
 Total fragments: 3200363
Proteins after random average filtering: 7179
 Total fragments: 1396484
Proteins after disorder filtering: 4433
 Total fragments: 77550
Proteins after pattern filtering: 2274
 Total fragments: 18118
Proteins after MINT filtering: 10
 Total fragments: 132


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAAA

17.61

4.01

0.00

Best peptides

MRPYRFRWRH

0.00

8.04

4.03

         
Interactors      
P38041

GRAPKPPSYP

10.45

-8.37

-12.38

PSYPSPVQPP

10.60

-2.39

-6.40

ESPGRAPKPP

10.60

-3.02

-7.03

P29366

IMPYIPGPVP

7.95

-3.96

-7.97

KRIMPYIPGP

8.53

-5.97

-9.98

PYIPGPVPYV

13.21

-3.16

-7.17

P21268

LNLSKPISPP

9.03

-4.88

-8.89

SKPISPPPSL

12.23

-1.01

-5.02

PLNLSKPISP

12.53

-3.69

-7.70

P11433

YTNSNPSATP

11.96

-1.76

-5.77

NSNPSATPNM

14.62

-1.41

-5.42

P50090

VTPTLPPNQH

9.77

-2.34

-6.35

ASTALPWSPE

11.36

-0.53

-4.54

ALPWSPESKN

12.88

-1.25

-5.26

P32618

PVSYSPSNEP

9.25

-3.24

-7.25

AKEPSPKPSH

9.73

-2.07

-6.08

KSEPAPLPSH

10.73

1.89

-2.12

Q03497

HKQHKPKVKP

7.68

-4.31

-8.32

FIPSRPAPKP

8.16

-4.03

-8.04

HKPKVKPSKP

8.96

-5.96

-9.97

P39969

RRAPKPPSYP

7.41

-3.07

-7.08

VSPRRAPKPP

7.55

-6.15

-10.16

CFKLLPPQPG

10.81

-2.20

-6.21

P22224

MTPSTPTFPN

9.29

-1.82

-5.83

IFPSTPGTID

10.85

-2.09

-6.10

QSPMTPSTPT

11.82

0.81

-3.20

P35735

PLASPHFNPQ

12.99

-3.20

-7.21

LASPHFNPQS

13.44

-2.92

-6.93

 


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