ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D1_JO8-LCK-26.PDB
Scoring matrix: BEM1-D1_JO8-LCK-26_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAA
Foldx wt ligand score: 15.08
Foldx random average score for Saccharomyces cerevisiae: 11.071

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
 Total fragments: 3207542
Proteins after random average filtering: 7179
 Total fragments: 1426963
Proteins after disorder filtering: 4552
 Total fragments: 81882
Proteins after pattern filtering: 2258
 Total fragments: 16687
Proteins after MINT filtering: 10
 Total fragments: 123


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAA

15.08

-2.52

0.00

Best peptides

DDRPRGMPW

0.00

-1.37

1.15

         
Interactors      
P38041

VQPPQSPSF

6.78

-7.16

-4.64

VPPQPGSKK

7.21

-3.63

-1.11

GRAPKPPSY

7.60

-6.93

-4.41

P29366

MPYIPGPVP

6.62

-4.77

-2.25

RIMPYIPGP

6.84

-7.62

-5.10

KRIMPYIPG

8.80

-5.29

-2.77

P21268

SKPISPPPS

8.43

-6.84

-4.32

KPISPPPSL

8.56

-4.22

-1.70

LSKPISPPP

8.63

-5.92

-3.40

P11433

SNPSATPNM

9.93

-6.76

-4.24

NSNPSATPN

10.88

-2.91

-0.39

P50090

IVTPTLPPN

7.59

-5.82

-3.30

PTLPPNQHR

8.93

-6.82

-4.30

TALPWSPES

9.24

-6.36

-3.84

P32618

SEPAPLPSH

5.28

-7.90

-5.38

KEPSPKPSH

5.87

-7.21

-4.69

NDVPIVPGN

6.25

-6.29

-3.77

Q03497

HKPKVKPSK

5.01

-7.22

-4.70

KFIPSRPAP

5.31

-6.89

-4.37

PLPPIPPTK

6.35

-7.83

-5.31

P39969

RRAPKPPSY

6.43

-7.22

-4.70

LPPQPGSKK

7.38

-3.85

-1.33

YPSPAQPPK

7.66

-6.58

-4.06

P22224

PMTPSTPTF

9.57

-4.87

-2.35

STPTFPNAN

10.10

-4.63

-2.11

TPSTPTFPN

10.37

-5.01

-2.49

P35735

ASPHFNPQS

10.10

-5.46

-2.94

LASPHFNPQ

10.16

-4.01

-1.49

SPHFNPQSS

10.47

-2.86

-0.34

 


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