ADAN database

 

Scanning Information and Binding Energy of Known Targets

Matrix information:                                                    (Help)
ADAN-name: BEM1-D1_JO8-LCK-15.PDB
Scoring matrix: BEM1-D1_JO8-LCK-15_mat
Uniprot code: P29366
Genome source: Saccharomyces cerevisiae
Wild-type ligand: AAAAAAAAA
Foldx wt ligand score: 20.38
Foldx random average score for Saccharomyces cerevisiae: 14.730

Available information for P29366 in MINT (Nov 2008):
Nš of interacting proteins: 16
 Proteins belonging to other specie: 1
Nš of interactions described: 42
 Interactions with other species: 2

Genome scanning information:
Subcellular location: False
Proteins in genome Saccharomyces cerevisiae: 7409
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 230
Total scanned proteins: 7179
 Total fragments: 3207542
Proteins after random average filtering: 7179
 Total fragments: 1551074
Proteins after disorder filtering: 4499
 Total fragments: 58288
Proteins after pattern filtering: 1882
 Total fragments: 6378
Proteins after MINT filtering: 9
 Total fragments: 48


Prediction of know targets:

Ligand peptide Sequence Foldx score ΔGbinding ΔΔG
Reference wt

AAAAAAAAA

20.38

0.62

0.00

Best peptides

HPWGIRKNK

0.00

5.06

4.44

         
Interactors      
P38041

VPPQPGSKK

11.71

-3.10

-3.72

PQSPSFNNR

12.00

-3.87

-4.49

FESPGRAPK

12.05

-2.22

-2.84

P29366

YIPGPVPYV

8.27

-4.12

-4.74

MPYIPGPVP

14.11

-5.87

-6.49

P21268

KPISPPPSL

12.54

-3.77

-4.39

PISPPPSLK

13.40

-3.71

-4.33

P11433

SNPSATPNM

14.11

-0.89

-1.51

NPSATPNME

14.68

-1.70

-2.32

P50090

ALPWSPESK

12.07

-3.19

-3.81

P32618

EPSPKPSHK

11.67

-3.03

-3.65

VPAKEPSPK

12.81

-2.41

-3.03

TPSTSPSGR

12.93

-4.04

-4.66

Q03497

HKPKVKPSK

7.21

-2.84

-3.46

SFPSKNPLK

11.48

-3.39

-4.01

KSFPSKNPL

12.30

-2.30

-2.92

P39969

LPPQPGSKK

10.87

-4.67

-5.29

LSPIPSPTR

11.33

-3.84

-4.46

YPSPAQPPK

11.44

-3.70

-4.32

P22224

TPTFPNANG

13.93

-2.28

-2.90

FPSTPGTID

14.72

-2.07

-2.69

 


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