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Matrix information:
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ADAN-name: 1SHA2.PDB
Scoring matrix: 1SHA2_mat
Uniprot code: P00524
Genome source: Rous sarcoma virus (strain Schmidt-Ruppin A)
Wild-type ligand: yVPML
Foldx wt ligand score: 3.24
Foldx random average score for Rous sarcoma virus (strain Schmidt-Ruppin A): 10.441 Available information for P00524 in MINT (Nov 2008):
Nš of interacting proteins: 2
Proteins belonging to other specie: 2
Nš of interactions described: 3
Interactions with other species: 3
Genome scanning information:
Subcellular location: False
Proteins in genome Rous sarcoma virus (strain Schmidt-Ruppin A): 6
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 0
Total scanned proteins: 6
Total fragments: 4030
Proteins after random average filtering: 6
Total fragments: 2038
Proteins after disorder filtering: 3
Total fragments: 146
Proteins after pattern filtering: 2
Total fragments: 12
Proteins after MINT filtering: 0
Total fragments: 0
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
yVPML |
3.24
|
-9.00 |
0.00 |
| Best peptides |
yEyMP |
0.00
|
-7.39 |
1.61 |
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