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Matrix information:
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ADAN-name: 1B8Q2.PDB
Scoring matrix: 1B8Q2_mat
Uniprot code: P29476
Genome source: Rattus norvegicus
Wild-type ligand: VVKVDSV
Foldx wt ligand score: 5.59
Foldx random average score for Rattus norvegicus: 10.896 Available information for P29476 in MINT (Nov 2008):
Nš of interacting proteins: 14
Proteins belonging to other specie: 3
Nš of interactions described: 28
Interactions with other species: 7
Genome scanning information:
Subcellular location: False
Proteins in genome Rattus norvegicus: 15006
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 3052
Total scanned proteins: 11954
Total fragments: 5580843
Proteins after random average filtering: 11954
Total fragments: 3591954
Proteins after disorder filtering: 9311
Total fragments: 367622
Proteins after pattern filtering: 6971
Total fragments: 33485
Proteins after MINT filtering: 9
Total fragments: 32
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
VVKVDSV |
5.59
|
-4.76 |
0.00 |
| Best peptides |
RRFDMDV |
0.00
|
7.50 |
12.26 |
| |
|
|
|
|
| Interactors |
|
|
|
|
| O54960 |
SHIDTTV |
5.28
|
-6.02 |
-1.26 |
|
LGTGTPL |
8.43
|
-4.51 |
0.25 |
| Q9Z2F5 |
PPGVVSV |
4.93
|
-5.60 |
-0.84 |
|
PGVVSVA |
8.79
|
-3.19 |
1.57 |
| Q63622 |
DKFGSCV |
5.31
|
-4.59 |
0.17 |
|
PHYHLGL |
7.45
|
-5.74 |
-0.98 |
|
LEYKTSL |
8.32
|
-5.52 |
-0.76 |
| Q80W92 |
DGPDLQV |
3.77
|
-6.44 |
-1.68 |
|
FGSGISV |
5.81
|
-4.95 |
-0.19 |
|
DEPKSVA |
9.83
|
-3.22 |
1.54 |
| P97756 |
ASRPTPV |
4.72
|
-6.34 |
-1.58 |
|
RARAASV |
5.53
|
-5.11 |
-0.35 |
|
PPRGSQA |
7.24
|
-2.43 |
2.33 |
| Q00960 |
VVGGVPA |
5.50
|
-4.16 |
0.60 |
|
HNYSSTV |
6.50
|
-4.40 |
0.36 |
|
SKKPLDI |
6.90
|
-9.20 |
-4.44 |
| P47858 |
GQGGSKL |
9.34
|
-3.73 |
1.03 |
| P31016 |
DKFGSCV |
5.31
|
-4.59 |
0.17 |
|
NSPPVIV |
6.51
|
-7.82 |
-3.06 |
|
YLSDSYA |
7.43
|
-1.95 |
2.81 |
| P63331 |
DRGGWGI |
8.97
|
-5.58 |
-0.82 |
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