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Matrix information:
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ADAN-name: 1AVZ2.PDB
Scoring matrix: 1AVZ2_mat
Uniprot code: P03406
Genome source: Human immunodeficiency virus type 1 (isolate BRU)
Wild-type ligand: TPQVPLRPM
Foldx wt ligand score: 3.73
Foldx random average score for Human immunodeficiency virus type 1 (isolate BRU): 11.342 Available information for P03406 in MINT (Nov 2008):
Nš of interacting proteins: 0
Proteins belonging to other specie: 0
Nš of interactions described: 0
Interactions with other species: 0
Genome scanning information:
Subcellular location: False
Proteins in genome Human immunodeficiency virus type 1 (isolate BRU): 9
Proteins located in other compartments: 0
Proteins considered as fragments or having non-standard amino acids: 0
Total scanned proteins: 9
Total fragments: 3525
Proteins after random average filtering: 9
Total fragments: 1806
Proteins after disorder filtering: 6
Total fragments: 82
Proteins after pattern filtering: 4
Total fragments: 31
Proteins after MINT filtering: 0
Total fragments: 0
Prediction of know targets:
| Ligand peptide |
Sequence |
Foldx score |
ΔGbinding |
ΔΔG |
| Reference wt |
TPQVPLRPM |
3.73
|
-12.32 |
0.00 |
| Best peptides |
RPHRPHRRR |
0.00
|
-13.64 |
-1.32 |
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